PDBTM: Protein Data Bank of Transmembrane Proteins
PDBTM version: 2020-06-26
Number of transmembrane proteins: 5131 (alpha: 4639 , beta: 460 )
Content of 6vjz
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<pdbtm xmlns="http://pdbtm.enzim.hu" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://pdbtm_data.enzim.hu/pdbtm.xsd pdbtm.xsd" ID="6vjz" TMP="yes">
<COPYRIGHT>
All information, data and files are copyright. PDBTM database is
produced in the Institute of Enzymology, Budapest, Hungary. There
are no restrictions on its use by non-profit institutions as long
as its content is in no way modified and this statement is not
removed from entries. Usage by and for commercial entities requires
a license agreement (send an email to pdbtm at enzim dot hu).
</COPYRIGHT>
<CREATE_DATE>2020-04-30</CREATE_DATE>
<MODIFICATION>
<DATE>2020-04-30</DATE>
<DESCR>Interfacial helix detected.</DESCR>
</MODIFICATION>
<RAWRES>
<TMRES>65.52</TMRES>
<TMTYPE>Tm_Alpha</TMTYPE>
<SPRES>Unknown</SPRES>
<PDBKWRES>no</PDBKWRES>
</RAWRES>
<MEMBRANE>
<NORMAL X="0.00000000" Y="0.00000000" Z="11.25000000"/>
<TMATRIX>
<ROWX X="0.93360251" Y="-0.19648953" Z="-0.29963005" T="-49.48522949"/>
<ROWY X="0.00000000" Y="0.83623052" Z="-0.54837805" T="-42.11416626"/>
<ROWZ X="0.35831034" Y="0.51196712" Z="0.78070694" T="-189.23609924"/>
</TMATRIX>
</MEMBRANE>
<CHAIN CHAINID="C" NUM_TM="6" TYPE="alpha">
<SEQ>
MDAVILNLLG DIPLVTRLWT IGCLVLSGLT SLRIVDPGKV VYSYDLVFKK
GQYGRLLYSI FDYGAFNWIS MINIFVSANH LSTLENSFNL RRKFCWIIFL
LLVILVKMTS IEQPAASLGV LLHENLVYYE LKKNGNQMNV RFFGAIDVSP
SIFPIYMNAV MYFVYKRSWL EIAMNFMPGH VIYYMDDIIG KIYGIDLCKS
PYDWFRNTET P
</SEQ>
<REGION seq_beg="13" pdb_beg="13" seq_end="13" pdb_end="13" type="2"/>
<REGION seq_beg="14" pdb_beg="14" seq_end="27" pdb_end="27" type="H"/>
<REGION seq_beg="28" pdb_beg="28" seq_end="43" pdb_end="43" type="1"/>
<REGION seq_beg="44" pdb_beg="44" seq_end="50" pdb_end="50" type="F"/>
<REGION seq_beg="51" pdb_beg="51" seq_end="52" pdb_end="52" type="1"/>
<REGION seq_beg="53" pdb_beg="53" seq_end="61" pdb_end="61" type="F"/>
<REGION seq_beg="62" pdb_beg="62" seq_end="68" pdb_end="68" type="1"/>
<REGION seq_beg="69" pdb_beg="69" seq_end="85" pdb_end="85" type="H"/>
<REGION seq_beg="86" pdb_beg="86" seq_end="94" pdb_end="94" type="2"/>
<REGION seq_beg="95" pdb_beg="95" seq_end="109" pdb_end="109" type="H"/>
<REGION seq_beg="110" pdb_beg="110" seq_end="117" pdb_end="117" type="1"/>
<REGION seq_beg="118" pdb_beg="118" seq_end="132" pdb_end="132" type="H"/>
<REGION seq_beg="133" pdb_beg="133" seq_end="134" pdb_end="134" type="2"/>
<REGION seq_beg="150" pdb_beg="150" seq_end="150" pdb_end="150" type="2"/>
<REGION seq_beg="151" pdb_beg="151" seq_end="166" pdb_end="166" type="H"/>
<REGION seq_beg="167" pdb_beg="167" seq_end="169" pdb_end="169" type="1"/>
<REGION seq_beg="170" pdb_beg="170" seq_end="185" pdb_end="185" type="H"/>
<REGION seq_beg="186" pdb_beg="186" seq_end="192" pdb_end="192" type="2"/>
</CHAIN>
<CHAIN CHAINID="B" NUM_TM="8" TYPE="alpha">
<SEQ>
MVPENRRKQL AIFVVVTYLL TFYCVYSATK TSVSFLQVTL KLNEGFNLMV
LSIFILLNST LLWQLLTKLL FGELRLIEHE HIFERLPFTI INTLFMSSLF
HERYFFTVAF FGLLLLYLKV FHWILKDRLE ALLQSINDST TMKTLIFSRF
SFNLVLLAVV DYQIITRCIS SIYTNQKSDI ESTSLYLIQV MEFTMLLIDL
LNLFLQTCLN FWEFYRSQQS LSNENNHIVH GDPTDENTVE SDQSQPVLND
DDDDDDDDRQ FTGLEGKFMY EKAIDVFTRF LKTALHLSML IPFRMPMMLL
KDVVWDILAL YQSGTSLWKI WRNNKQLDDT LVTVTVEQLQ NSANDDNICI
ICMDELIHSP NQQTWKNKNK KPKRLPCGHI LHLSCLKNWM ERSQTCPICR
LPVFDEKGNV VQTTFTSNSD ITTQTTVTDS TGIATDQQGF ANEVDLLPTR
TTSPDIRIVP TQNIDTLAMR TRSTSTPSPT
</SEQ>
<REGION seq_beg="1" pdb_beg="1" seq_end="6" pdb_end="6" type="2"/>
<REGION seq_beg="7" pdb_beg="7" seq_end="20" pdb_end="20" type="H"/>
<REGION seq_beg="21" pdb_beg="21" seq_end="52" pdb_end="52" type="1"/>
<REGION seq_beg="53" pdb_beg="53" seq_end="70" pdb_end="70" type="H"/>
<REGION seq_beg="71" pdb_beg="71" seq_end="85" pdb_end="85" type="2"/>
<REGION seq_beg="86" pdb_beg="86" seq_end="98" pdb_end="98" type="H"/>
<REGION seq_beg="99" pdb_beg="99" seq_end="109" pdb_end="109" type="1"/>
<REGION seq_beg="110" pdb_beg="110" seq_end="125" pdb_end="125" type="H"/>
<REGION seq_beg="126" pdb_beg="126" seq_end="151" pdb_end="151" type="2"/>
<REGION seq_beg="152" pdb_beg="152" seq_end="166" pdb_end="166" type="H"/>
<REGION seq_beg="167" pdb_beg="167" seq_end="188" pdb_end="188" type="1"/>
<REGION seq_beg="189" pdb_beg="189" seq_end="205" pdb_end="205" type="H"/>
<REGION seq_beg="206" pdb_beg="206" seq_end="220" pdb_end="220" type="2"/>
<REGION seq_beg="265" pdb_beg="265" seq_end="274" pdb_end="274" type="2"/>
<REGION seq_beg="275" pdb_beg="275" seq_end="290" pdb_end="290" type="H"/>
<REGION seq_beg="291" pdb_beg="291" seq_end="297" pdb_end="297" type="1"/>
<REGION seq_beg="298" pdb_beg="298" seq_end="311" pdb_end="311" type="H"/>
<REGION seq_beg="312" pdb_beg="312" seq_end="324" pdb_end="324" type="2"/>
</CHAIN>
<CHAIN CHAINID="A" NUM_TM="0" TYPE="non_tm">
<SEQ>
MITLLLYLCV ICNAIVLIRA DSIADPWPEA RHLLNTIAKS RDPMKEAAME
PNADEFVGFY VPMDYSPRNE EKNYQSIWQN EITDSQRHIY ELLVQSSEQF
NNSEATYTLS QIHLWSQYNF PHNMTLAHKY LEKFNDLTHF TNHSAIFDLA
VMYATGGCAS GNDQTVIPQD SAKALLYYQR AAQLGNLKAK QVLAYKYYSG
FNVPRNFHKS LVLYRDIAEQ LRKSYSRDEW DIVFPYWESY NVRISDFESG
LLGKGLNSVP SSTVRKRTTR PDIGSPFIAQ VNGVQMTLQI EPMGRFAFNG
NDGNINGDED DEDASERRII RIYYAALNDY KGTYSQSRNC ERAKNLLELT
YKEFQPHVDN LDPLQVFYYV RCLQLLGHMY FTGEGSSKPN IHMAEEILTT
SLEISRRAQG PIGRACIDLG LINQYITNNI SQAISYYMKA MKTQANNGIV
EFQLSKLATS FPEEKIGDPF NLMETAYLNG FIPAIYEFAV MIESGMNSKS
SVENTAYLFK TFVDKNEAIM APKLRTAFAA LINDRSEVAL WAYSQLAEQG
YETAQVSAAY LMYQLPYEFE DPPRTTDQRK TLAISYYTRA FKQGNIDAGV
VAGDIYFQMQ NYSKAMALYQ GAALKYSIQA IWNLGYMHEH GLGVNRDFHL
AKRYYDQVSE HDHRFYLASK LSVLKLHLKS WLTWITREKV NYWKPSSPLN
PNEDTQHSKT SWYKQLTKIL QRMRHKEDSD KAAEDSHKHR TVVQNGANHR
GDDQEEASEI LGFQMED
</SEQ>
<REGION seq_beg="26" pdb_beg="26" seq_end="50" pdb_end="50" type="1"/>
<REGION seq_beg="57" pdb_beg="57" seq_end="158" pdb_end="158" type="1"/>
<REGION seq_beg="168" pdb_beg="168" seq_end="270" pdb_end="270" type="1"/>
<REGION seq_beg="313" pdb_beg="313" seq_end="495" pdb_end="495" type="1"/>
<REGION seq_beg="497" pdb_beg="497" seq_end="665" pdb_end="665" type="1"/>
<REGION seq_beg="666" pdb_beg="666" seq_end="685" pdb_end="685" type="F"/>
<REGION seq_beg="686" pdb_beg="686" seq_end="686" pdb_end="686" type="1"/>
</CHAIN>
<CHAIN CHAINID="D" NUM_TM="0" TYPE="non_tm">
<SEQ>
VRAADNTSSA NDNNTVENDE SAWNRRVVRP LRNSFPLLLV LIRTFYLIGY
NSLVPFFIIL EFGSFLPWKY IILLSLLFIF RTVWNTQEVW NLWRDYLHLN
EIDEVKFSQI KEFINSNSLT LNFYKKCKDT QSAIDLLMIP NLHEQRLSVY
SKYDIEYDTN TPDVGQLNLL FIKVLSGEIP KDALDELFKE FFELYETTRN
MNTLYPQDSL NELLLMIWKE SQKKDINTLP KYRRWFQTLC SQIAEHNVLD
VVLRYIIPDP VNDRVITAVI KNFVLFWVTL LPYVKEKLDD IVAQRARDRE
QPAPSAQQQE NEDEALIIPD EEEPTATGAQ PHLYIPDED
</SEQ>
<REGION seq_beg="246" pdb_beg="745" seq_end="246" pdb_end="745" type="2"/>
<REGION seq_beg="247" pdb_beg="746" seq_end="253" pdb_end="752" type="F"/>
<REGION seq_beg="254" pdb_beg="753" seq_end="290" pdb_end="789" type="2"/>
</CHAIN>
</pdbtm>
Overview
6vjz
PDB code:6vjz
Chain(s):C[6], B[8], A[0], D[0]
PDBTM type:Tm_Alpha
Title:CRYOEM STRUCTURE OF HRD1-USA1/DER1/HRD3 COMPLEX OF THE EXPECTED TOPOLOGY
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