PDBTM: Protein Data Bank of Transmembrane Proteins
PDBTM version: 2020-07-03
Number of transmembrane proteins: 5146 (alpha: 4654 , beta: 460 )
Content of 6pqo
<?xml version="1.0" encoding="iso-8859-1"?>
<pdbtm xmlns="http://pdbtm.enzim.hu" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://pdbtm_data.enzim.hu/pdbtm.xsd pdbtm.xsd" ID="6pqo" TMP="yes">
<COPYRIGHT>
All information, data and files are copyright. PDBTM database is
produced in the Institute of Enzymology, Budapest, Hungary. There
are no restrictions on its use by non-profit institutions as long
as its content is in no way modified and this statement is not
removed from entries. Usage by and for commercial entities requires
a license agreement (send an email to pdbtm at enzim dot hu).
</COPYRIGHT>
<CREATE_DATE>2020-02-10</CREATE_DATE>
<MODIFICATION>
<DATE>2020-02-10</DATE>
<DESCR>Interfacial helix detected.</DESCR>
</MODIFICATION>
<RAWRES>
<TMRES>59.74</TMRES>
<TMTYPE>Tm_Alpha</TMTYPE>
<SPRES>Unknown</SPRES>
<PDBKWRES>yes</PDBKWRES>
<PDBKWORD>Membrane</PDBKWORD>
</RAWRES>
<MEMBRANE>
<NORMAL X="-0.00576779" Y="0.00011182" Z="14.75000000"/>
<TMATRIX>
<ROWX X="1.00000000" Y="0.00000000" Z="0.00000000" T="-138.18327332"/>
<ROWY X="0.00000000" Y="1.00000000" Z="0.00000000" T="138.19914246"/>
<ROWZ X="0.00000000" Y="0.00000000" Z="1.00000000" T="-196.18110657"/>
</TMATRIX>
</MEMBRANE>
<CHAIN CHAINID="D" NUM_TM="6" TYPE="alpha">
<SEQ>
MAKRSLRKMW RPGEKKEPQG VVYEDVPDDT EDFKESLKVV FEGSAYGLQN
FNKQKKLKRC DDMDTFFLHY AAAEGQIELM EKITRDSSLE VLHEMDDYGN
TPLHCAVEKN QIESVKFLLS RGANPNLRNF NMMAPLHIAV QGMNNEVMKV
LLEHRTIDVN LEGENGNTAV IIACTTNNSE ALQILLKKGA KPCKSNKWGC
FPIHQAAFSG SKECMEIILR FGEEHGYSRQ LHINFMNNGK ATPLHLAVQN
GDLEMIKMCL DNGAQIDPVE KGRCTAIHFA ATQGATEIVK LMISSYSGSV
DIVNTTDGCH ETMLHRASLF DHHELADYLI SVGADINKID SEGRSPLILA
TASASWNIVN LLLSKGAQVD IKDNFGRNFL HLTVQQPYGL KNLRPEFMQM
QQIKELVMDE DNDGCTPLHY ACRQGGPGSV NNLLGFNVSI HSKSKDKKSP
LHFAASYGRI NTCQRLLQDI SDTRLLNEGD LHGMTPLHLA AKNGHDKVVQ
LLLKKGALFL SDHNGWTALH HASMGGYTQT MKVILDTNLK CTDRLDEDGN
TALHFAAREG HAKAVALLLS HNADIVLNKQ QASFLHLALH NKRKEVVLTI
IRSKRWDECL KIFSHNSPGN KCPITEMIEY LPECMKVLLD FCMLHSTEDK
SCRDYYIEYN FKYLQCPLEF TKKTPTQDVI YEPLTALNAM VQNNRIELLN
HPVCKEYLLM KWLAYGFRAH MMNLGSYCLG LIPMTILVVN IKPGMAFNST
GIINETSDHS EILDTTNSYL IKTCMILVFL SSIFGYCKEA GQIFQQKRNY
FMDISNVLEW IIYTTGIIFV LPLFVEIPAH LQWQCGAIAV YFYWMNFLLY
LQRFENCGIF IVMLEVILKT LLRSTVVFIF LLLAFGLSFY ILLNLQDPFS
SPLLSIIQTF SMMLGDINYR ESFLEPYLRN ELAHPVLSFA QLVSFTIFVP
IVLMNLLIGL AVGDIAEVQK HASLKRIAMQ VELHTSLEKK LPLWFLRKVD
QKSTIVYPNK PRSGGMLFHI FCFLFCTGEI RQEIPNADKS LEMEILKQKY
RLKDLTFLLE KQHELIKLII QKMEIISETE DDDSHCSFQD RFKKEQMEQR
NSRWNTVLRA VKAKTHHLEP SNSLEVLFQG PAADYKDDDD KAHHHHHHHH
HH
</SEQ>
<REGION seq_beg="447" pdb_beg="446" seq_end="721" pdb_end="720" type="1"/>
<REGION seq_beg="722" pdb_beg="721" seq_end="740" pdb_end="739" type="H"/>
<REGION seq_beg="741" pdb_beg="740" seq_end="754" pdb_end="753" type="2"/>
<REGION seq_beg="762" pdb_beg="761" seq_end="769" pdb_end="768" type="2"/>
<REGION seq_beg="770" pdb_beg="769" seq_end="793" pdb_end="792" type="H"/>
<REGION seq_beg="794" pdb_beg="793" seq_end="803" pdb_end="802" type="1"/>
<REGION seq_beg="804" pdb_beg="803" seq_end="825" pdb_end="824" type="H"/>
<REGION seq_beg="826" pdb_beg="825" seq_end="831" pdb_end="830" type="2"/>
<REGION seq_beg="832" pdb_beg="831" seq_end="851" pdb_end="850" type="H"/>
<REGION seq_beg="852" pdb_beg="851" seq_end="857" pdb_end="856" type="1"/>
<REGION seq_beg="858" pdb_beg="857" seq_end="867" pdb_end="866" type="F"/>
<REGION seq_beg="868" pdb_beg="867" seq_end="892" pdb_end="891" type="H"/>
<REGION seq_beg="893" pdb_beg="892" seq_end="902" pdb_end="901" type="2"/>
<REGION seq_beg="903" pdb_beg="902" seq_end="919" pdb_end="918" type="L"/>
<REGION seq_beg="920" pdb_beg="919" seq_end="935" pdb_end="934" type="2"/>
<REGION seq_beg="936" pdb_beg="935" seq_end="958" pdb_end="957" type="H"/>
<REGION seq_beg="959" pdb_beg="958" seq_end="1013" pdb_end="1012" type="1"/>
<REGION seq_beg="1016" pdb_beg="1015" seq_end="1016" pdb_end="1015" type="1"/>
<REGION seq_beg="1017" pdb_beg="1016" seq_end="1024" pdb_end="1023" type="F"/>
<REGION seq_beg="1025" pdb_beg="1024" seq_end="1026" pdb_end="1025" type="1"/>
<REGION seq_beg="1040" pdb_beg="1039" seq_end="1080" pdb_end="1079" type="1"/>
</CHAIN>
<CHAIN CHAINID="A" NUM_TM="6" TYPE="alpha">
<SEQ>
MAKRSLRKMW RPGEKKEPQG VVYEDVPDDT EDFKESLKVV FEGSAYGLQN
FNKQKKLKRC DDMDTFFLHY AAAEGQIELM EKITRDSSLE VLHEMDDYGN
TPLHCAVEKN QIESVKFLLS RGANPNLRNF NMMAPLHIAV QGMNNEVMKV
LLEHRTIDVN LEGENGNTAV IIACTTNNSE ALQILLKKGA KPCKSNKWGC
FPIHQAAFSG SKECMEIILR FGEEHGYSRQ LHINFMNNGK ATPLHLAVQN
GDLEMIKMCL DNGAQIDPVE KGRCTAIHFA ATQGATEIVK LMISSYSGSV
DIVNTTDGCH ETMLHRASLF DHHELADYLI SVGADINKID SEGRSPLILA
TASASWNIVN LLLSKGAQVD IKDNFGRNFL HLTVQQPYGL KNLRPEFMQM
QQIKELVMDE DNDGCTPLHY ACRQGGPGSV NNLLGFNVSI HSKSKDKKSP
LHFAASYGRI NTCQRLLQDI SDTRLLNEGD LHGMTPLHLA AKNGHDKVVQ
LLLKKGALFL SDHNGWTALH HASMGGYTQT MKVILDTNLK CTDRLDEDGN
TALHFAAREG HAKAVALLLS HNADIVLNKQ QASFLHLALH NKRKEVVLTI
IRSKRWDECL KIFSHNSPGN KCPITEMIEY LPECMKVLLD FCMLHSTEDK
SCRDYYIEYN FKYLQCPLEF TKKTPTQDVI YEPLTALNAM VQNNRIELLN
HPVCKEYLLM KWLAYGFRAH MMNLGSYCLG LIPMTILVVN IKPGMAFNST
GIINETSDHS EILDTTNSYL IKTCMILVFL SSIFGYCKEA GQIFQQKRNY
FMDISNVLEW IIYTTGIIFV LPLFVEIPAH LQWQCGAIAV YFYWMNFLLY
LQRFENCGIF IVMLEVILKT LLRSTVVFIF LLLAFGLSFY ILLNLQDPFS
SPLLSIIQTF SMMLGDINYR ESFLEPYLRN ELAHPVLSFA QLVSFTIFVP
IVLMNLLIGL AVGDIAEVQK HASLKRIAMQ VELHTSLEKK LPLWFLRKVD
QKSTIVYPNK PRSGGMLFHI FCFLFCTGEI RQEIPNADKS LEMEILKQKY
RLKDLTFLLE KQHELIKLII QKMEIISETE DDDSHCSFQD RFKKEQMEQR
NSRWNTVLRA VKAKTHHLEP SNSLEVLFQG PAADYKDDDD KAHHHHHHHH
HH
</SEQ>
<REGION seq_beg="447" pdb_beg="446" seq_end="721" pdb_end="720" type="1"/>
<REGION seq_beg="722" pdb_beg="721" seq_end="740" pdb_end="739" type="H"/>
<REGION seq_beg="741" pdb_beg="740" seq_end="754" pdb_end="753" type="2"/>
<REGION seq_beg="762" pdb_beg="761" seq_end="769" pdb_end="768" type="2"/>
<REGION seq_beg="770" pdb_beg="769" seq_end="793" pdb_end="792" type="H"/>
<REGION seq_beg="794" pdb_beg="793" seq_end="803" pdb_end="802" type="1"/>
<REGION seq_beg="804" pdb_beg="803" seq_end="825" pdb_end="824" type="H"/>
<REGION seq_beg="826" pdb_beg="825" seq_end="831" pdb_end="830" type="2"/>
<REGION seq_beg="832" pdb_beg="831" seq_end="851" pdb_end="850" type="H"/>
<REGION seq_beg="852" pdb_beg="851" seq_end="857" pdb_end="856" type="1"/>
<REGION seq_beg="858" pdb_beg="857" seq_end="867" pdb_end="866" type="F"/>
<REGION seq_beg="868" pdb_beg="867" seq_end="892" pdb_end="891" type="H"/>
<REGION seq_beg="893" pdb_beg="892" seq_end="902" pdb_end="901" type="2"/>
<REGION seq_beg="903" pdb_beg="902" seq_end="919" pdb_end="918" type="L"/>
<REGION seq_beg="920" pdb_beg="919" seq_end="935" pdb_end="934" type="2"/>
<REGION seq_beg="936" pdb_beg="935" seq_end="958" pdb_end="957" type="H"/>
<REGION seq_beg="959" pdb_beg="958" seq_end="1013" pdb_end="1012" type="1"/>
<REGION seq_beg="1016" pdb_beg="1015" seq_end="1016" pdb_end="1015" type="1"/>
<REGION seq_beg="1017" pdb_beg="1016" seq_end="1024" pdb_end="1023" type="F"/>
<REGION seq_beg="1025" pdb_beg="1024" seq_end="1026" pdb_end="1025" type="1"/>
<REGION seq_beg="1040" pdb_beg="1039" seq_end="1080" pdb_end="1079" type="1"/>
</CHAIN>
<CHAIN CHAINID="B" NUM_TM="6" TYPE="alpha">
<SEQ>
MAKRSLRKMW RPGEKKEPQG VVYEDVPDDT EDFKESLKVV FEGSAYGLQN
FNKQKKLKRC DDMDTFFLHY AAAEGQIELM EKITRDSSLE VLHEMDDYGN
TPLHCAVEKN QIESVKFLLS RGANPNLRNF NMMAPLHIAV QGMNNEVMKV
LLEHRTIDVN LEGENGNTAV IIACTTNNSE ALQILLKKGA KPCKSNKWGC
FPIHQAAFSG SKECMEIILR FGEEHGYSRQ LHINFMNNGK ATPLHLAVQN
GDLEMIKMCL DNGAQIDPVE KGRCTAIHFA ATQGATEIVK LMISSYSGSV
DIVNTTDGCH ETMLHRASLF DHHELADYLI SVGADINKID SEGRSPLILA
TASASWNIVN LLLSKGAQVD IKDNFGRNFL HLTVQQPYGL KNLRPEFMQM
QQIKELVMDE DNDGCTPLHY ACRQGGPGSV NNLLGFNVSI HSKSKDKKSP
LHFAASYGRI NTCQRLLQDI SDTRLLNEGD LHGMTPLHLA AKNGHDKVVQ
LLLKKGALFL SDHNGWTALH HASMGGYTQT MKVILDTNLK CTDRLDEDGN
TALHFAAREG HAKAVALLLS HNADIVLNKQ QASFLHLALH NKRKEVVLTI
IRSKRWDECL KIFSHNSPGN KCPITEMIEY LPECMKVLLD FCMLHSTEDK
SCRDYYIEYN FKYLQCPLEF TKKTPTQDVI YEPLTALNAM VQNNRIELLN
HPVCKEYLLM KWLAYGFRAH MMNLGSYCLG LIPMTILVVN IKPGMAFNST
GIINETSDHS EILDTTNSYL IKTCMILVFL SSIFGYCKEA GQIFQQKRNY
FMDISNVLEW IIYTTGIIFV LPLFVEIPAH LQWQCGAIAV YFYWMNFLLY
LQRFENCGIF IVMLEVILKT LLRSTVVFIF LLLAFGLSFY ILLNLQDPFS
SPLLSIIQTF SMMLGDINYR ESFLEPYLRN ELAHPVLSFA QLVSFTIFVP
IVLMNLLIGL AVGDIAEVQK HASLKRIAMQ VELHTSLEKK LPLWFLRKVD
QKSTIVYPNK PRSGGMLFHI FCFLFCTGEI RQEIPNADKS LEMEILKQKY
RLKDLTFLLE KQHELIKLII QKMEIISETE DDDSHCSFQD RFKKEQMEQR
NSRWNTVLRA VKAKTHHLEP SNSLEVLFQG PAADYKDDDD KAHHHHHHHH
HH
</SEQ>
<REGION seq_beg="447" pdb_beg="446" seq_end="721" pdb_end="720" type="1"/>
<REGION seq_beg="722" pdb_beg="721" seq_end="740" pdb_end="739" type="H"/>
<REGION seq_beg="741" pdb_beg="740" seq_end="754" pdb_end="753" type="2"/>
<REGION seq_beg="762" pdb_beg="761" seq_end="769" pdb_end="768" type="2"/>
<REGION seq_beg="770" pdb_beg="769" seq_end="793" pdb_end="792" type="H"/>
<REGION seq_beg="794" pdb_beg="793" seq_end="803" pdb_end="802" type="1"/>
<REGION seq_beg="804" pdb_beg="803" seq_end="825" pdb_end="824" type="H"/>
<REGION seq_beg="826" pdb_beg="825" seq_end="831" pdb_end="830" type="2"/>
<REGION seq_beg="832" pdb_beg="831" seq_end="851" pdb_end="850" type="H"/>
<REGION seq_beg="852" pdb_beg="851" seq_end="857" pdb_end="856" type="1"/>
<REGION seq_beg="858" pdb_beg="857" seq_end="867" pdb_end="866" type="F"/>
<REGION seq_beg="868" pdb_beg="867" seq_end="892" pdb_end="891" type="H"/>
<REGION seq_beg="893" pdb_beg="892" seq_end="902" pdb_end="901" type="2"/>
<REGION seq_beg="903" pdb_beg="902" seq_end="919" pdb_end="918" type="L"/>
<REGION seq_beg="920" pdb_beg="919" seq_end="935" pdb_end="934" type="2"/>
<REGION seq_beg="936" pdb_beg="935" seq_end="958" pdb_end="957" type="H"/>
<REGION seq_beg="959" pdb_beg="958" seq_end="1013" pdb_end="1012" type="1"/>
<REGION seq_beg="1016" pdb_beg="1015" seq_end="1016" pdb_end="1015" type="1"/>
<REGION seq_beg="1017" pdb_beg="1016" seq_end="1024" pdb_end="1023" type="F"/>
<REGION seq_beg="1025" pdb_beg="1024" seq_end="1026" pdb_end="1025" type="1"/>
<REGION seq_beg="1040" pdb_beg="1039" seq_end="1080" pdb_end="1079" type="1"/>
</CHAIN>
<CHAIN CHAINID="C" NUM_TM="6" TYPE="alpha">
<SEQ>
MAKRSLRKMW RPGEKKEPQG VVYEDVPDDT EDFKESLKVV FEGSAYGLQN
FNKQKKLKRC DDMDTFFLHY AAAEGQIELM EKITRDSSLE VLHEMDDYGN
TPLHCAVEKN QIESVKFLLS RGANPNLRNF NMMAPLHIAV QGMNNEVMKV
LLEHRTIDVN LEGENGNTAV IIACTTNNSE ALQILLKKGA KPCKSNKWGC
FPIHQAAFSG SKECMEIILR FGEEHGYSRQ LHINFMNNGK ATPLHLAVQN
GDLEMIKMCL DNGAQIDPVE KGRCTAIHFA ATQGATEIVK LMISSYSGSV
DIVNTTDGCH ETMLHRASLF DHHELADYLI SVGADINKID SEGRSPLILA
TASASWNIVN LLLSKGAQVD IKDNFGRNFL HLTVQQPYGL KNLRPEFMQM
QQIKELVMDE DNDGCTPLHY ACRQGGPGSV NNLLGFNVSI HSKSKDKKSP
LHFAASYGRI NTCQRLLQDI SDTRLLNEGD LHGMTPLHLA AKNGHDKVVQ
LLLKKGALFL SDHNGWTALH HASMGGYTQT MKVILDTNLK CTDRLDEDGN
TALHFAAREG HAKAVALLLS HNADIVLNKQ QASFLHLALH NKRKEVVLTI
IRSKRWDECL KIFSHNSPGN KCPITEMIEY LPECMKVLLD FCMLHSTEDK
SCRDYYIEYN FKYLQCPLEF TKKTPTQDVI YEPLTALNAM VQNNRIELLN
HPVCKEYLLM KWLAYGFRAH MMNLGSYCLG LIPMTILVVN IKPGMAFNST
GIINETSDHS EILDTTNSYL IKTCMILVFL SSIFGYCKEA GQIFQQKRNY
FMDISNVLEW IIYTTGIIFV LPLFVEIPAH LQWQCGAIAV YFYWMNFLLY
LQRFENCGIF IVMLEVILKT LLRSTVVFIF LLLAFGLSFY ILLNLQDPFS
SPLLSIIQTF SMMLGDINYR ESFLEPYLRN ELAHPVLSFA QLVSFTIFVP
IVLMNLLIGL AVGDIAEVQK HASLKRIAMQ VELHTSLEKK LPLWFLRKVD
QKSTIVYPNK PRSGGMLFHI FCFLFCTGEI RQEIPNADKS LEMEILKQKY
RLKDLTFLLE KQHELIKLII QKMEIISETE DDDSHCSFQD RFKKEQMEQR
NSRWNTVLRA VKAKTHHLEP SNSLEVLFQG PAADYKDDDD KAHHHHHHHH
HH
</SEQ>
<REGION seq_beg="447" pdb_beg="446" seq_end="721" pdb_end="720" type="1"/>
<REGION seq_beg="722" pdb_beg="721" seq_end="740" pdb_end="739" type="H"/>
<REGION seq_beg="741" pdb_beg="740" seq_end="754" pdb_end="753" type="2"/>
<REGION seq_beg="762" pdb_beg="761" seq_end="769" pdb_end="768" type="2"/>
<REGION seq_beg="770" pdb_beg="769" seq_end="793" pdb_end="792" type="H"/>
<REGION seq_beg="794" pdb_beg="793" seq_end="801" pdb_end="800" type="1"/>
<REGION seq_beg="802" pdb_beg="801" seq_end="824" pdb_end="823" type="H"/>
<REGION seq_beg="825" pdb_beg="824" seq_end="831" pdb_end="830" type="2"/>
<REGION seq_beg="832" pdb_beg="831" seq_end="851" pdb_end="850" type="H"/>
<REGION seq_beg="852" pdb_beg="851" seq_end="857" pdb_end="856" type="1"/>
<REGION seq_beg="858" pdb_beg="857" seq_end="867" pdb_end="866" type="F"/>
<REGION seq_beg="868" pdb_beg="867" seq_end="892" pdb_end="891" type="H"/>
<REGION seq_beg="893" pdb_beg="892" seq_end="902" pdb_end="901" type="2"/>
<REGION seq_beg="903" pdb_beg="902" seq_end="919" pdb_end="918" type="L"/>
<REGION seq_beg="920" pdb_beg="919" seq_end="935" pdb_end="934" type="2"/>
<REGION seq_beg="936" pdb_beg="935" seq_end="958" pdb_end="957" type="H"/>
<REGION seq_beg="959" pdb_beg="958" seq_end="1013" pdb_end="1012" type="1"/>
<REGION seq_beg="1016" pdb_beg="1015" seq_end="1016" pdb_end="1015" type="1"/>
<REGION seq_beg="1017" pdb_beg="1016" seq_end="1024" pdb_end="1023" type="F"/>
<REGION seq_beg="1025" pdb_beg="1024" seq_end="1026" pdb_end="1025" type="1"/>
<REGION seq_beg="1040" pdb_beg="1039" seq_end="1080" pdb_end="1079" type="1"/>
</CHAIN>
</pdbtm>
Overview
6pqo
PDB code:6pqo
Chain(s):D[6], A[6], B[6], C[6]
PDBTM type:Tm_Alpha
Title:CRYO-EM STRUCTURE OF THE HUMAN TRPA1 ION CHANNEL IN COMPLEX WITH THE COVALENT AGONIST JT010
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