PDBTM: Protein Data Bank of Transmembrane Proteins
PDBTM version: 2020-06-26
Number of transmembrane proteins: 5131 (alpha: 4639 , beta: 460 )
Content of 6m04
<?xml version="1.0" encoding="iso-8859-1"?>
<pdbtm xmlns="http://pdbtm.enzim.hu" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://pdbtm_data.enzim.hu/pdbtm.xsd pdbtm.xsd" ID="6m04" TMP="yes">
<COPYRIGHT>
All information, data and files are copyright. PDBTM database is
produced in the Institute of Enzymology, Budapest, Hungary. There
are no restrictions on its use by non-profit institutions as long
as its content is in no way modified and this statement is not
removed from entries. Usage by and for commercial entities requires
a license agreement (send an email to pdbtm at enzim dot hu).
</COPYRIGHT>
<CREATE_DATE>2020-06-18</CREATE_DATE>
<MODIFICATION>
<DATE>2020-06-18</DATE>
<DESCR>Interfacial helix detected.</DESCR>
</MODIFICATION>
<RAWRES>
<TMRES>66.38</TMRES>
<TMTYPE>Tm_Alpha</TMTYPE>
<SPRES>Unknown</SPRES>
<PDBKWRES>yes</PDBKWRES>
<PDBKWORD>Membrane</PDBKWORD>
</RAWRES>
<MEMBRANE>
<NORMAL X="-0.00011732" Y="0.00000388" Z="18.00000000"/>
<TMATRIX>
<ROWX X="1.00000000" Y="0.00000000" Z="0.00000000" T="-178.79965210"/>
<ROWY X="0.00000000" Y="1.00000000" Z="0.00000000" T="-178.79991150"/>
<ROWZ X="0.00000000" Y="0.00000000" Z="1.00000000" T="-212.67680359"/>
</TMATRIX>
</MEMBRANE>
<CHAIN CHAINID="A" NUM_TM="5" TYPE="alpha">
<SEQ>
MFTLAEVASL NDIQPTYRIL KPWWDVFMDY LAVVMLMVAI FAGTMQLTKD
QVVCLPVLPS PVNSKAHTPP GNAEVTTNIP KMEAATNQDQ DGRTTNDISF
GTSAVTPDIP LRATYPRTDF ALPNQEAKKE KKDPTGRKTN LDFQQYVFIN
QMCYHLALPW YSKYFPYLAL IHTIILMVSS NFWFKYPKTC SKVEHFVSIL
GKCFESPWTT KALSETACED SEENKQRITG AQTLPKHVST SSDEGSPSAS
TPMINKTGFK FSAEKPVIEV PSMTILDKKD GEQAKALFEK VRKFRAHVED
SDLIYKLYVV QTVIKTAKFI FILCYTANFV NAISFEHVCK PKVEHLIGYE
VFECTHNMAY MLKKLLISYI SIICVYGFIC LYTLFWLFRI PLKEYSFEKV
REESSFSDIP DVKNDFAFLL HMVDQYDQLY SKRFGVFLSE VSENKLREIS
LNHEWTFEKL RQHISRNAQD KQELHLFMLS GVPDAVFDLT DLDVLKLELI
PEAKIPAKIS QMTNLQELHL CHCPAKVEQT AFSFLRDHLR CLHVKFTDVA
EIPAWVYLLK NLRELYLIGN LNSENNKMIG LESLRELRHL KILHVKSNLT
KVPSNITDVA PHLTKLVIHN DGTKLLVLNS LKKMMNVAEL ELQNCELERI
PHAIFSLSNL QELDLKSNNI RTIEEIISFQ HLKRLTCLKL WHNKIVTIPP
SITHVKNLES LYFSNNKLES LPVAVFSLQK LRCLDVSYNN ISMIPIEIGL
LQNLQHLHIT GNKVDILPKQ LFKCIKLRTL NLGQNCITSL PEKVGQLSQL
TQLELKGNCF DRLPAQLGQC RMLKKSGLVV EDHLFDTLPL EVKEALNQDI
NIPFANGIGT ENLYFQ
</SEQ>
<REGION seq_beg="2" pdb_beg="2" seq_end="2" pdb_end="2" type="2"/>
<REGION seq_beg="3" pdb_beg="3" seq_end="14" pdb_end="14" type="H"/>
<REGION seq_beg="15" pdb_beg="15" seq_end="23" pdb_end="23" type="1"/>
<REGION seq_beg="24" pdb_beg="24" seq_end="48" pdb_end="48" type="H"/>
<REGION seq_beg="49" pdb_beg="49" seq_end="59" pdb_end="59" type="2"/>
<REGION seq_beg="135" pdb_beg="135" seq_end="163" pdb_end="163" type="2"/>
<REGION seq_beg="164" pdb_beg="164" seq_end="186" pdb_end="186" type="H"/>
<REGION seq_beg="187" pdb_beg="187" seq_end="216" pdb_end="216" type="1"/>
<REGION seq_beg="277" pdb_beg="277" seq_end="306" pdb_end="306" type="1"/>
<REGION seq_beg="307" pdb_beg="307" seq_end="331" pdb_end="331" type="H"/>
<REGION seq_beg="332" pdb_beg="332" seq_end="361" pdb_end="361" type="2"/>
<REGION seq_beg="362" pdb_beg="362" seq_end="389" pdb_end="389" type="H"/>
<REGION seq_beg="390" pdb_beg="390" seq_end="419" pdb_end="419" type="1"/>
<REGION seq_beg="420" pdb_beg="420" seq_end="426" pdb_end="426" type="F"/>
<REGION seq_beg="427" pdb_beg="427" seq_end="850" pdb_end="850" type="1"/>
</CHAIN>
<CHAIN CHAINID="B" NUM_TM="5" TYPE="alpha">
<SEQ>
MFTLAEVASL NDIQPTYRIL KPWWDVFMDY LAVVMLMVAI FAGTMQLTKD
QVVCLPVLPS PVNSKAHTPP GNAEVTTNIP KMEAATNQDQ DGRTTNDISF
GTSAVTPDIP LRATYPRTDF ALPNQEAKKE KKDPTGRKTN LDFQQYVFIN
QMCYHLALPW YSKYFPYLAL IHTIILMVSS NFWFKYPKTC SKVEHFVSIL
GKCFESPWTT KALSETACED SEENKQRITG AQTLPKHVST SSDEGSPSAS
TPMINKTGFK FSAEKPVIEV PSMTILDKKD GEQAKALFEK VRKFRAHVED
SDLIYKLYVV QTVIKTAKFI FILCYTANFV NAISFEHVCK PKVEHLIGYE
VFECTHNMAY MLKKLLISYI SIICVYGFIC LYTLFWLFRI PLKEYSFEKV
REESSFSDIP DVKNDFAFLL HMVDQYDQLY SKRFGVFLSE VSENKLREIS
LNHEWTFEKL RQHISRNAQD KQELHLFMLS GVPDAVFDLT DLDVLKLELI
PEAKIPAKIS QMTNLQELHL CHCPAKVEQT AFSFLRDHLR CLHVKFTDVA
EIPAWVYLLK NLRELYLIGN LNSENNKMIG LESLRELRHL KILHVKSNLT
KVPSNITDVA PHLTKLVIHN DGTKLLVLNS LKKMMNVAEL ELQNCELERI
PHAIFSLSNL QELDLKSNNI RTIEEIISFQ HLKRLTCLKL WHNKIVTIPP
SITHVKNLES LYFSNNKLES LPVAVFSLQK LRCLDVSYNN ISMIPIEIGL
LQNLQHLHIT GNKVDILPKQ LFKCIKLRTL NLGQNCITSL PEKVGQLSQL
TQLELKGNCF DRLPAQLGQC RMLKKSGLVV EDHLFDTLPL EVKEALNQDI
NIPFANGIGT ENLYFQ
</SEQ>
<REGION seq_beg="2" pdb_beg="2" seq_end="2" pdb_end="2" type="2"/>
<REGION seq_beg="3" pdb_beg="3" seq_end="14" pdb_end="14" type="H"/>
<REGION seq_beg="15" pdb_beg="15" seq_end="23" pdb_end="23" type="1"/>
<REGION seq_beg="24" pdb_beg="24" seq_end="48" pdb_end="48" type="H"/>
<REGION seq_beg="49" pdb_beg="49" seq_end="59" pdb_end="59" type="2"/>
<REGION seq_beg="135" pdb_beg="135" seq_end="161" pdb_end="161" type="2"/>
<REGION seq_beg="162" pdb_beg="162" seq_end="186" pdb_end="186" type="H"/>
<REGION seq_beg="187" pdb_beg="187" seq_end="216" pdb_end="216" type="1"/>
<REGION seq_beg="277" pdb_beg="277" seq_end="306" pdb_end="306" type="1"/>
<REGION seq_beg="307" pdb_beg="307" seq_end="331" pdb_end="331" type="H"/>
<REGION seq_beg="332" pdb_beg="332" seq_end="361" pdb_end="361" type="2"/>
<REGION seq_beg="362" pdb_beg="362" seq_end="389" pdb_end="389" type="H"/>
<REGION seq_beg="390" pdb_beg="390" seq_end="419" pdb_end="419" type="1"/>
<REGION seq_beg="420" pdb_beg="420" seq_end="426" pdb_end="426" type="F"/>
<REGION seq_beg="427" pdb_beg="427" seq_end="850" pdb_end="850" type="1"/>
</CHAIN>
<CHAIN CHAINID="C" NUM_TM="5" TYPE="alpha">
<SEQ>
MFTLAEVASL NDIQPTYRIL KPWWDVFMDY LAVVMLMVAI FAGTMQLTKD
QVVCLPVLPS PVNSKAHTPP GNAEVTTNIP KMEAATNQDQ DGRTTNDISF
GTSAVTPDIP LRATYPRTDF ALPNQEAKKE KKDPTGRKTN LDFQQYVFIN
QMCYHLALPW YSKYFPYLAL IHTIILMVSS NFWFKYPKTC SKVEHFVSIL
GKCFESPWTT KALSETACED SEENKQRITG AQTLPKHVST SSDEGSPSAS
TPMINKTGFK FSAEKPVIEV PSMTILDKKD GEQAKALFEK VRKFRAHVED
SDLIYKLYVV QTVIKTAKFI FILCYTANFV NAISFEHVCK PKVEHLIGYE
VFECTHNMAY MLKKLLISYI SIICVYGFIC LYTLFWLFRI PLKEYSFEKV
REESSFSDIP DVKNDFAFLL HMVDQYDQLY SKRFGVFLSE VSENKLREIS
LNHEWTFEKL RQHISRNAQD KQELHLFMLS GVPDAVFDLT DLDVLKLELI
PEAKIPAKIS QMTNLQELHL CHCPAKVEQT AFSFLRDHLR CLHVKFTDVA
EIPAWVYLLK NLRELYLIGN LNSENNKMIG LESLRELRHL KILHVKSNLT
KVPSNITDVA PHLTKLVIHN DGTKLLVLNS LKKMMNVAEL ELQNCELERI
PHAIFSLSNL QELDLKSNNI RTIEEIISFQ HLKRLTCLKL WHNKIVTIPP
SITHVKNLES LYFSNNKLES LPVAVFSLQK LRCLDVSYNN ISMIPIEIGL
LQNLQHLHIT GNKVDILPKQ LFKCIKLRTL NLGQNCITSL PEKVGQLSQL
TQLELKGNCF DRLPAQLGQC RMLKKSGLVV EDHLFDTLPL EVKEALNQDI
NIPFANGIGT ENLYFQ
</SEQ>
<REGION seq_beg="2" pdb_beg="2" seq_end="2" pdb_end="2" type="2"/>
<REGION seq_beg="3" pdb_beg="3" seq_end="14" pdb_end="14" type="H"/>
<REGION seq_beg="15" pdb_beg="15" seq_end="22" pdb_end="22" type="1"/>
<REGION seq_beg="23" pdb_beg="23" seq_end="48" pdb_end="48" type="H"/>
<REGION seq_beg="49" pdb_beg="49" seq_end="58" pdb_end="58" type="2"/>
<REGION seq_beg="135" pdb_beg="135" seq_end="163" pdb_end="163" type="2"/>
<REGION seq_beg="164" pdb_beg="164" seq_end="183" pdb_end="183" type="H"/>
<REGION seq_beg="184" pdb_beg="184" seq_end="216" pdb_end="216" type="1"/>
<REGION seq_beg="277" pdb_beg="277" seq_end="306" pdb_end="306" type="1"/>
<REGION seq_beg="307" pdb_beg="307" seq_end="330" pdb_end="330" type="H"/>
<REGION seq_beg="331" pdb_beg="331" seq_end="361" pdb_end="361" type="2"/>
<REGION seq_beg="362" pdb_beg="362" seq_end="390" pdb_end="390" type="H"/>
<REGION seq_beg="391" pdb_beg="391" seq_end="418" pdb_end="418" type="1"/>
<REGION seq_beg="419" pdb_beg="419" seq_end="426" pdb_end="426" type="F"/>
<REGION seq_beg="427" pdb_beg="427" seq_end="850" pdb_end="850" type="1"/>
</CHAIN>
<CHAIN CHAINID="D" NUM_TM="5" TYPE="alpha">
<SEQ>
MFTLAEVASL NDIQPTYRIL KPWWDVFMDY LAVVMLMVAI FAGTMQLTKD
QVVCLPVLPS PVNSKAHTPP GNAEVTTNIP KMEAATNQDQ DGRTTNDISF
GTSAVTPDIP LRATYPRTDF ALPNQEAKKE KKDPTGRKTN LDFQQYVFIN
QMCYHLALPW YSKYFPYLAL IHTIILMVSS NFWFKYPKTC SKVEHFVSIL
GKCFESPWTT KALSETACED SEENKQRITG AQTLPKHVST SSDEGSPSAS
TPMINKTGFK FSAEKPVIEV PSMTILDKKD GEQAKALFEK VRKFRAHVED
SDLIYKLYVV QTVIKTAKFI FILCYTANFV NAISFEHVCK PKVEHLIGYE
VFECTHNMAY MLKKLLISYI SIICVYGFIC LYTLFWLFRI PLKEYSFEKV
REESSFSDIP DVKNDFAFLL HMVDQYDQLY SKRFGVFLSE VSENKLREIS
LNHEWTFEKL RQHISRNAQD KQELHLFMLS GVPDAVFDLT DLDVLKLELI
PEAKIPAKIS QMTNLQELHL CHCPAKVEQT AFSFLRDHLR CLHVKFTDVA
EIPAWVYLLK NLRELYLIGN LNSENNKMIG LESLRELRHL KILHVKSNLT
KVPSNITDVA PHLTKLVIHN DGTKLLVLNS LKKMMNVAEL ELQNCELERI
PHAIFSLSNL QELDLKSNNI RTIEEIISFQ HLKRLTCLKL WHNKIVTIPP
SITHVKNLES LYFSNNKLES LPVAVFSLQK LRCLDVSYNN ISMIPIEIGL
LQNLQHLHIT GNKVDILPKQ LFKCIKLRTL NLGQNCITSL PEKVGQLSQL
TQLELKGNCF DRLPAQLGQC RMLKKSGLVV EDHLFDTLPL EVKEALNQDI
NIPFANGIGT ENLYFQ
</SEQ>
<REGION seq_beg="2" pdb_beg="2" seq_end="2" pdb_end="2" type="2"/>
<REGION seq_beg="3" pdb_beg="3" seq_end="14" pdb_end="14" type="H"/>
<REGION seq_beg="15" pdb_beg="15" seq_end="23" pdb_end="23" type="1"/>
<REGION seq_beg="24" pdb_beg="24" seq_end="48" pdb_end="48" type="H"/>
<REGION seq_beg="49" pdb_beg="49" seq_end="59" pdb_end="59" type="2"/>
<REGION seq_beg="135" pdb_beg="135" seq_end="163" pdb_end="163" type="2"/>
<REGION seq_beg="164" pdb_beg="164" seq_end="186" pdb_end="186" type="H"/>
<REGION seq_beg="187" pdb_beg="187" seq_end="216" pdb_end="216" type="1"/>
<REGION seq_beg="277" pdb_beg="277" seq_end="306" pdb_end="306" type="1"/>
<REGION seq_beg="307" pdb_beg="307" seq_end="331" pdb_end="331" type="H"/>
<REGION seq_beg="332" pdb_beg="332" seq_end="361" pdb_end="361" type="2"/>
<REGION seq_beg="362" pdb_beg="362" seq_end="389" pdb_end="389" type="H"/>
<REGION seq_beg="390" pdb_beg="390" seq_end="419" pdb_end="419" type="1"/>
<REGION seq_beg="420" pdb_beg="420" seq_end="426" pdb_end="426" type="F"/>
<REGION seq_beg="427" pdb_beg="427" seq_end="850" pdb_end="850" type="1"/>
</CHAIN>
<CHAIN CHAINID="E" NUM_TM="5" TYPE="alpha">
<SEQ>
MFTLAEVASL NDIQPTYRIL KPWWDVFMDY LAVVMLMVAI FAGTMQLTKD
QVVCLPVLPS PVNSKAHTPP GNAEVTTNIP KMEAATNQDQ DGRTTNDISF
GTSAVTPDIP LRATYPRTDF ALPNQEAKKE KKDPTGRKTN LDFQQYVFIN
QMCYHLALPW YSKYFPYLAL IHTIILMVSS NFWFKYPKTC SKVEHFVSIL
GKCFESPWTT KALSETACED SEENKQRITG AQTLPKHVST SSDEGSPSAS
TPMINKTGFK FSAEKPVIEV PSMTILDKKD GEQAKALFEK VRKFRAHVED
SDLIYKLYVV QTVIKTAKFI FILCYTANFV NAISFEHVCK PKVEHLIGYE
VFECTHNMAY MLKKLLISYI SIICVYGFIC LYTLFWLFRI PLKEYSFEKV
REESSFSDIP DVKNDFAFLL HMVDQYDQLY SKRFGVFLSE VSENKLREIS
LNHEWTFEKL RQHISRNAQD KQELHLFMLS GVPDAVFDLT DLDVLKLELI
PEAKIPAKIS QMTNLQELHL CHCPAKVEQT AFSFLRDHLR CLHVKFTDVA
EIPAWVYLLK NLRELYLIGN LNSENNKMIG LESLRELRHL KILHVKSNLT
KVPSNITDVA PHLTKLVIHN DGTKLLVLNS LKKMMNVAEL ELQNCELERI
PHAIFSLSNL QELDLKSNNI RTIEEIISFQ HLKRLTCLKL WHNKIVTIPP
SITHVKNLES LYFSNNKLES LPVAVFSLQK LRCLDVSYNN ISMIPIEIGL
LQNLQHLHIT GNKVDILPKQ LFKCIKLRTL NLGQNCITSL PEKVGQLSQL
TQLELKGNCF DRLPAQLGQC RMLKKSGLVV EDHLFDTLPL EVKEALNQDI
NIPFANGIGT ENLYFQ
</SEQ>
<REGION seq_beg="2" pdb_beg="2" seq_end="2" pdb_end="2" type="2"/>
<REGION seq_beg="3" pdb_beg="3" seq_end="14" pdb_end="14" type="H"/>
<REGION seq_beg="15" pdb_beg="15" seq_end="23" pdb_end="23" type="1"/>
<REGION seq_beg="24" pdb_beg="24" seq_end="48" pdb_end="48" type="H"/>
<REGION seq_beg="49" pdb_beg="49" seq_end="59" pdb_end="59" type="2"/>
<REGION seq_beg="135" pdb_beg="135" seq_end="161" pdb_end="161" type="2"/>
<REGION seq_beg="162" pdb_beg="162" seq_end="186" pdb_end="186" type="H"/>
<REGION seq_beg="187" pdb_beg="187" seq_end="216" pdb_end="216" type="1"/>
<REGION seq_beg="277" pdb_beg="277" seq_end="306" pdb_end="306" type="1"/>
<REGION seq_beg="307" pdb_beg="307" seq_end="331" pdb_end="331" type="H"/>
<REGION seq_beg="332" pdb_beg="332" seq_end="361" pdb_end="361" type="2"/>
<REGION seq_beg="362" pdb_beg="362" seq_end="389" pdb_end="389" type="H"/>
<REGION seq_beg="390" pdb_beg="390" seq_end="419" pdb_end="419" type="1"/>
<REGION seq_beg="420" pdb_beg="420" seq_end="426" pdb_end="426" type="F"/>
<REGION seq_beg="427" pdb_beg="427" seq_end="850" pdb_end="850" type="1"/>
</CHAIN>
<CHAIN CHAINID="F" NUM_TM="5" TYPE="alpha">
<SEQ>
MFTLAEVASL NDIQPTYRIL KPWWDVFMDY LAVVMLMVAI FAGTMQLTKD
QVVCLPVLPS PVNSKAHTPP GNAEVTTNIP KMEAATNQDQ DGRTTNDISF
GTSAVTPDIP LRATYPRTDF ALPNQEAKKE KKDPTGRKTN LDFQQYVFIN
QMCYHLALPW YSKYFPYLAL IHTIILMVSS NFWFKYPKTC SKVEHFVSIL
GKCFESPWTT KALSETACED SEENKQRITG AQTLPKHVST SSDEGSPSAS
TPMINKTGFK FSAEKPVIEV PSMTILDKKD GEQAKALFEK VRKFRAHVED
SDLIYKLYVV QTVIKTAKFI FILCYTANFV NAISFEHVCK PKVEHLIGYE
VFECTHNMAY MLKKLLISYI SIICVYGFIC LYTLFWLFRI PLKEYSFEKV
REESSFSDIP DVKNDFAFLL HMVDQYDQLY SKRFGVFLSE VSENKLREIS
LNHEWTFEKL RQHISRNAQD KQELHLFMLS GVPDAVFDLT DLDVLKLELI
PEAKIPAKIS QMTNLQELHL CHCPAKVEQT AFSFLRDHLR CLHVKFTDVA
EIPAWVYLLK NLRELYLIGN LNSENNKMIG LESLRELRHL KILHVKSNLT
KVPSNITDVA PHLTKLVIHN DGTKLLVLNS LKKMMNVAEL ELQNCELERI
PHAIFSLSNL QELDLKSNNI RTIEEIISFQ HLKRLTCLKL WHNKIVTIPP
SITHVKNLES LYFSNNKLES LPVAVFSLQK LRCLDVSYNN ISMIPIEIGL
LQNLQHLHIT GNKVDILPKQ LFKCIKLRTL NLGQNCITSL PEKVGQLSQL
TQLELKGNCF DRLPAQLGQC RMLKKSGLVV EDHLFDTLPL EVKEALNQDI
NIPFANGIGT ENLYFQ
</SEQ>
<REGION seq_beg="2" pdb_beg="2" seq_end="2" pdb_end="2" type="2"/>
<REGION seq_beg="3" pdb_beg="3" seq_end="14" pdb_end="14" type="H"/>
<REGION seq_beg="15" pdb_beg="15" seq_end="22" pdb_end="22" type="1"/>
<REGION seq_beg="23" pdb_beg="23" seq_end="48" pdb_end="48" type="H"/>
<REGION seq_beg="49" pdb_beg="49" seq_end="58" pdb_end="58" type="2"/>
<REGION seq_beg="135" pdb_beg="135" seq_end="163" pdb_end="163" type="2"/>
<REGION seq_beg="164" pdb_beg="164" seq_end="183" pdb_end="183" type="H"/>
<REGION seq_beg="184" pdb_beg="184" seq_end="216" pdb_end="216" type="1"/>
<REGION seq_beg="277" pdb_beg="277" seq_end="306" pdb_end="306" type="1"/>
<REGION seq_beg="307" pdb_beg="307" seq_end="330" pdb_end="330" type="H"/>
<REGION seq_beg="331" pdb_beg="331" seq_end="361" pdb_end="361" type="2"/>
<REGION seq_beg="362" pdb_beg="362" seq_end="390" pdb_end="390" type="H"/>
<REGION seq_beg="391" pdb_beg="391" seq_end="418" pdb_end="418" type="1"/>
<REGION seq_beg="419" pdb_beg="419" seq_end="426" pdb_end="426" type="F"/>
<REGION seq_beg="427" pdb_beg="427" seq_end="850" pdb_end="850" type="1"/>
</CHAIN>
</pdbtm>
Overview
6m04
PDB code:6m04
Chain(s):A[5], B[5], C[5], D[5], E[5], F[5]
PDBTM type:Tm_Alpha
Title:STRUCTURE OF THE HUMAN HOMO-HEXAMERIC LRRC8D CHANNEL AT 4.36 ANGSTROMS
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Cross references