PDBTM: Protein Data Bank of Transmembrane Proteins
PDBTM version: 2019-02-15
Number of transmembrane proteins: 4061 (alpha: 3612 , beta: 427 )
Content of 6iyc
<?xml version="1.0" encoding="iso-8859-1"?>
<pdbtm xmlns="http://pdbtm.enzim.hu" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://pdbtm_data.enzim.hu/pdbtm.xsd pdbtm.xsd" ID="6iyc" TMP="yes">
<COPYRIGHT>
All information, data and files are copyright. PDBTM database is
produced in the Institute of Enzymology, Budapest, Hungary. There
are no restrictions on its use by non-profit institutions as long
as its content is in no way modified and this statement is not
removed from entries. Usage by and for commercial entities requires
a license agreement (send an email to pdbtm at enzim dot hu).
</COPYRIGHT>
<CREATE_DATE>2019-07-23</CREATE_DATE>
<MODIFICATION>
<DATE>2019-07-23</DATE>
<DESCR>Interfacial helix detected.</DESCR>
</MODIFICATION>
<RAWRES>
<TMRES>71.24</TMRES>
<TMTYPE>Tm_Alpha</TMTYPE>
<SPRES>Unknown</SPRES>
<PDBKWRES>yes</PDBKWRES>
<PDBKWORD>Membrane</PDBKWORD>
</RAWRES>
<MEMBRANE>
<NORMAL X="0.00000000" Y="0.00000000" Z="13.25000000"/>
<TMATRIX>
<ROWX X="0.99999905" Y="-0.00030430" Z="0.00132958" T="-173.17988586"/>
<ROWY X="0.00000000" Y="0.97479498" Z="0.22310241" T="-212.90161133"/>
<ROWZ X="-0.00136395" Y="-0.22310220" Z="0.97479409" T="-120.65029907"/>
</TMATRIX>
</MEMBRANE>
<CHAIN CHAINID="A" NUM_TM="1" TYPE="alpha">
<SEQ>
MATAGGGSGA DPGSRGLLRL LSFCVLLAGL CRGNSVERKI YIPLNKTAPC
VRLLNATHQI GCQSSISGDT GVIHVVEKEE DLQWVLTDGP NPPYMVLLES
KHFTRDLMEK LKGRTSRIAG LAVSLTKPSP ASGFSPSVQC PNDGFGVYSN
SYGPEFAHCR EIQWNSLGNG LAYEDFSFPI FLLEDENETK VIKQCYQDHN
LSQNGSAPTF PLCAMQLFSH MHAVISTATC MRRSSIQSTF SINPEIVCDP
LSDYNVWSML KPINTTGTLK PDDRVVVAAT RLDSRSFFWN VAPGAESAVA
SFVTQLAAAE ALQKAPDVTT LPRNVMFVFF QGETFDYIGS SRMVYDMEKG
KFPVQLENVD SFVELGQVAL RTSLELWMHT DPVSQKNESV RNQVEDLLAT
LEKSGAGVPA VILRRPNQSQ PLPPSSLQRF LRARNISGVV LADHSGAFHN
KYYQSIYDTA ENINVSYPEW LSPEEDLNFV TDTAKALADV ATVLGRALYE
LAGGTNFSDT VQADPQTVTR LLYGFLIKAN NSWFQSILRQ DLRSYLGDGP
LQHYIAVSSP TNTTYVVQYA LANLTGTVVN LTREQCQDPS KVPSENKDLY
EYSWVQGPLH SNETDRLPRC VRSTARLARA LSPAFELSQW SSTEYSTWTE
SRWKDIRARI FLIASKELEL ITLTVGFGIL IFSLIVTYCI NAKADVLFIA
PREPGAVSY
</SEQ>
<REGION seq_beg="34" pdb_beg="34" seq_end="673" pdb_end="673" type="2"/>
<REGION seq_beg="674" pdb_beg="674" seq_end="691" pdb_end="691" type="H"/>
<REGION seq_beg="692" pdb_beg="692" seq_end="700" pdb_end="700" type="1"/>
</CHAIN>
<CHAIN CHAINID="B" NUM_TM="9" TYPE="alpha">
<SEQ>
MTELPAPLSY FQNAQMSEDN HLSNTVRSQN DNRERQEHND RRSLGHPEPL
SNGRPQGNSR QVVEQDEEED EELTLKYGAK HVIMLFVPVT LCMVVVVATI
KSVSFYTRKD GCLIYTPFTE DTETVGQRAL HSILNAAIMI SVIVVMTILL
VVLYKYRCYK VIHAWLIISS LLLLFFFSFI YLGEVFKTYN VAVDYITVAL
LIWNFGVVGM ISIHWKGPLR LQQAYLIMIS ALMALVFIKY LPEWTAWLIL
AVISVYDLVA VLCPKGPLRM LVETAQERNE TLFPALIYSS TMVWLVNMAE
GDPEAQRRVS KNSKYNAEST ERESQDTVAE NDDGGFSEEW EAQRDSHLGP
HRSTPESRAA VQELSSSILA GEDPEERGVK LGLGDFIFYS VLVGKASATA
SGDWNTTIAC FVAILIGLCL TLLLLAIFKK ALPALPISIT FGLVFYFATD
YLVQPFMDQL AFHQFYI
</SEQ>
<REGION seq_beg="73" pdb_beg="73" seq_end="85" pdb_end="85" type="1"/>
<REGION seq_beg="86" pdb_beg="86" seq_end="103" pdb_end="103" type="H"/>
<REGION seq_beg="104" pdb_beg="104" seq_end="130" pdb_end="130" type="2"/>
<REGION seq_beg="131" pdb_beg="131" seq_end="149" pdb_end="149" type="H"/>
<REGION seq_beg="150" pdb_beg="150" seq_end="164" pdb_end="164" type="1"/>
<REGION seq_beg="165" pdb_beg="165" seq_end="186" pdb_end="186" type="H"/>
<REGION seq_beg="187" pdb_beg="187" seq_end="193" pdb_end="193" type="2"/>
<REGION seq_beg="194" pdb_beg="194" seq_end="210" pdb_end="210" type="H"/>
<REGION seq_beg="211" pdb_beg="211" seq_end="223" pdb_end="223" type="1"/>
<REGION seq_beg="224" pdb_beg="224" seq_end="243" pdb_end="243" type="H"/>
<REGION seq_beg="244" pdb_beg="244" seq_end="244" pdb_end="244" type="2"/>
<REGION seq_beg="245" pdb_beg="245" seq_end="260" pdb_end="260" type="H"/>
<REGION seq_beg="261" pdb_beg="261" seq_end="291" pdb_end="291" type="1"/>
<REGION seq_beg="376" pdb_beg="376" seq_end="382" pdb_end="382" type="1"/>
<REGION seq_beg="383" pdb_beg="383" seq_end="398" pdb_end="398" type="H"/>
<REGION seq_beg="399" pdb_beg="399" seq_end="403" pdb_end="403" type="2"/>
<REGION seq_beg="404" pdb_beg="404" seq_end="420" pdb_end="420" type="H"/>
<REGION seq_beg="421" pdb_beg="421" seq_end="433" pdb_end="433" type="1"/>
<REGION seq_beg="434" pdb_beg="434" seq_end="450" pdb_end="450" type="H"/>
<REGION seq_beg="451" pdb_beg="451" seq_end="452" pdb_end="452" type="2"/>
<REGION seq_beg="453" pdb_beg="453" seq_end="463" pdb_end="463" type="F"/>
<REGION seq_beg="464" pdb_beg="464" seq_end="465" pdb_end="465" type="2"/>
<REGION seq_beg="466" pdb_beg="466" seq_end="467" pdb_end="467" type="I"/>
</CHAIN>
<CHAIN CHAINID="C" NUM_TM="7" TYPE="alpha">
<SEQ>
MGAAVFFGCT FVAFGPAFAL FLITVAGDPL RVIILVAGAF FWLVSLLLAS
VVWFILVHVT DRSDARLQYG LLIFGAAVSV LLQEVFRFAY YKLLKKADEG
LASLSEDGRS PISIRQMAYV SGLSFGIISG VFSVINILAD ALGPGVVGIH
GDSPYYFLTS AFLTAAIILL HTFWGVVFFD ACERRRYWAL GLVVGSHLLT
SGLTFLNPWY EASLLPIYAV TVSMGLWAFI TAGGSLRSIQ RSLLCRRQED
SRVMVYSALR IPPED
</SEQ>
<REGION seq_beg="2" pdb_beg="2" seq_end="6" pdb_end="6" type="2"/>
<REGION seq_beg="7" pdb_beg="7" seq_end="26" pdb_end="26" type="H"/>
<REGION seq_beg="27" pdb_beg="27" seq_end="32" pdb_end="32" type="1"/>
<REGION seq_beg="33" pdb_beg="33" seq_end="52" pdb_end="52" type="H"/>
<REGION seq_beg="53" pdb_beg="53" seq_end="75" pdb_end="75" type="2"/>
<REGION seq_beg="76" pdb_beg="76" seq_end="93" pdb_end="93" type="H"/>
<REGION seq_beg="94" pdb_beg="94" seq_end="118" pdb_end="118" type="1"/>
<REGION seq_beg="119" pdb_beg="119" seq_end="135" pdb_end="135" type="H"/>
<REGION seq_beg="136" pdb_beg="136" seq_end="161" pdb_end="161" type="2"/>
<REGION seq_beg="162" pdb_beg="162" seq_end="182" pdb_end="182" type="H"/>
<REGION seq_beg="183" pdb_beg="183" seq_end="185" pdb_end="185" type="1"/>
<REGION seq_beg="186" pdb_beg="186" seq_end="202" pdb_end="202" type="H"/>
<REGION seq_beg="203" pdb_beg="203" seq_end="215" pdb_end="215" type="2"/>
<REGION seq_beg="216" pdb_beg="216" seq_end="232" pdb_end="232" type="H"/>
<REGION seq_beg="233" pdb_beg="233" seq_end="235" pdb_end="235" type="1"/>
<REGION seq_beg="236" pdb_beg="236" seq_end="242" pdb_end="242" type="F"/>
<REGION seq_beg="243" pdb_beg="243" seq_end="244" pdb_end="244" type="1"/>
</CHAIN>
<CHAIN CHAINID="D" NUM_TM="1" TYPE="alpha">
<SEQ>
MNLERVSNEE KLNLCRKYYL GGFAFLPFLW LVNIFWFFRE AFLVPAYTEQ
SQIKGYVWRS AVGFLFWVIV LTSWITIFQI YRPRWGALGD YLSFTIPLGT
P
</SEQ>
<REGION seq_beg="2" pdb_beg="2" seq_end="62" pdb_end="62" type="1"/>
<REGION seq_beg="63" pdb_beg="63" seq_end="78" pdb_end="78" type="H"/>
<REGION seq_beg="79" pdb_beg="79" seq_end="101" pdb_end="101" type="2"/>
</CHAIN>
<CHAIN CHAINID="E" NUM_TM="1" TYPE="alpha">
<SEQ>
MLVFFAEDCG SNKGAIIGLM VGGVVIATVI VITLVMLKKK QYTSIHHGVV
EVDAAVTPEE RHLSKMQQNG YENPTYKFFE QMQNEQKLIS EEDLLEHHHH
HHHH
</SEQ>
<REGION seq_beg="2" pdb_beg="1" seq_end="7" pdb_end="6" type="2"/>
<REGION seq_beg="13" pdb_beg="12" seq_end="15" pdb_end="14" type="2"/>
<REGION seq_beg="16" pdb_beg="15" seq_end="34" pdb_end="33" type="H"/>
<REGION seq_beg="35" pdb_beg="34" seq_end="40" pdb_end="39" type="1"/>
</CHAIN>
</pdbtm>
Overview
6iyc
PDB code:6iyc
Chain(s):A[1], B[9], C[7], D[1], E[1]
PDBTM type:Tm_Alpha
Title:RECOGNITION OF THE AMYLOID PRECURSOR PROTEIN BY HUMAN GAMMA-SECRETASE
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