PDBTM: Protein Data Bank of Transmembrane Proteins
PDBTM version: 2019-02-15
Number of transmembrane proteins: 4061 (alpha: 3612 , beta: 427 )
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Content of 5t4d 
<?xml version="1.0" encoding="iso-8859-1"?>
<pdbtm xmlns="http://pdbtm.enzim.hu" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://pdbtm.enzim.hu/data/pdbtm.xsd pdbtm.xsd" ID="5t4d" TMP="yes">
  <COPYRIGHT>
     All  information, data  and  files are copyright.  PDBTM database is
     produced in the  Institute of  Enzymology,  Budapest, Hungary. There
     are no restrictions on  its  use by  non-profit institutions as long
     as its content  is  in  no  way  modified  and this statement is not
     removed from entries. Usage by and for  commercial entities requires
     a license agreement (send an email to pdbtm at enzim dot hu).
  </COPYRIGHT>
  <CREATE_DATE>2016-12-12</CREATE_DATE>
  <MODIFICATION>
    <DATE>2016-12-12</DATE>
    <DESCR>Interfacial helix detected.</DESCR>
  </MODIFICATION>
  <RAWRES>
    <TMRES>68.33</TMRES>
    <TMTYPE>Tm_Alpha</TMTYPE>
    <SPRES>Unknown</SPRES>
    <PDBKWRES>no</PDBKWRES>
  </RAWRES>
  <MEMBRANE>
    <NORMAL X="0.00058084" Y="0.00008505" Z="18.00000000"/>
    <TMATRIX>
      <ROWX X="1.00000000" Y="0.00000000" Z="0.00000000" T="-116.69802094"/>
      <ROWY X="0.00000000" Y="1.00000000" Z="0.00000000" T="-116.69994354"/>
      <ROWZ X="0.00000000" Y="0.00000000" Z="1.00000000" T="-129.86949158"/>
    </TMATRIX>
  </MEMBRANE>
  <CHAIN CHAINID="A" NUM_TM="6" TYPE="alpha">
    <SEQ>
      GAMGSRGLWG TRLMEESSTN REKYLKSVLR ELVTYLLFLI VLCILTYGMM 
      SSNVYYYTRM MSQLFLDTPV SKTEKTNFKT LSSMEDFWKF TEGSLLDGLY 
      WKMQPSNQTE ADNRSFIFYE NLLLGVPRIR QLRVRNGSCS IPQDLRDEIK 
      ECYDVYSVSS EDRAPFGPRN GTAWIYTSEK DLNGSSHWGI IATYSGAGYY 
      LDLSRTREET AAQVASLKKN VWLDRGTRAT FIDFSVYNAN INLFCVVRLL 
      VEFPATGGVI PSWQFQPLKL IRYVTTFDFF LAACEIIFCF FIFYYVVEEI 
      LEIRIHKLHY FRSFWNCLDV VIVVLSVVAI GINIYRTSNV EVLLQFLEDQ 
      NTFPNFEHLA YWQIQFNNIA AVTVFFVWIK LFKFINFNRT MSQLSTTMSR 
      CAKDLFGFAI MFFIIFLAYA QLAYLVFGTQ VDDFSTFQEC IFTQFRIILG 
      DINFAEIEEA NRVLGPIYFT TFVFFMFFIL LNMFLAIIND TYSEVKSDLA 
      QQKAEMELSD 
    </SEQ>
    <REGION seq_beg="24" pdb_beg="216" seq_end="27" pdb_end="219" type="2"/>
    <REGION seq_beg="28" pdb_beg="220" seq_end="50" pdb_end="242" type="H"/>
    <REGION seq_beg="51" pdb_beg="243" seq_end="103" pdb_end="295" type="1"/>
    <REGION seq_beg="110" pdb_beg="302" seq_end="279" pdb_end="471" type="1"/>
    <REGION seq_beg="280" pdb_beg="472" seq_end="301" pdb_end="493" type="H"/>
    <REGION seq_beg="312" pdb_beg="504" seq_end="312" pdb_end="504" type="2"/>
    <REGION seq_beg="313" pdb_beg="505" seq_end="336" pdb_end="528" type="H"/>
    <REGION seq_beg="337" pdb_beg="529" seq_end="362" pdb_end="554" type="1"/>
    <REGION seq_beg="363" pdb_beg="555" seq_end="388" pdb_end="580" type="H"/>
    <REGION seq_beg="389" pdb_beg="581" seq_end="397" pdb_end="589" type="F"/>
    <REGION seq_beg="398" pdb_beg="590" seq_end="428" pdb_end="620" type="H"/>
    <REGION seq_beg="429" pdb_beg="621" seq_end="436" pdb_end="628" type="1"/>
    <REGION seq_beg="437" pdb_beg="629" seq_end="454" pdb_end="646" type="L"/>
    <REGION seq_beg="455" pdb_beg="647" seq_end="460" pdb_end="652" type="F"/>
    <REGION seq_beg="461" pdb_beg="653" seq_end="461" pdb_end="653" type="1"/>
    <REGION seq_beg="462" pdb_beg="654" seq_end="489" pdb_end="681" type="H"/>
    <REGION seq_beg="490" pdb_beg="682" seq_end="502" pdb_end="694" type="2"/>
  </CHAIN>
  <CHAIN CHAINID="B" NUM_TM="6" TYPE="alpha">
    <SEQ>
      GAMGSRGLWG TRLMEESSTN REKYLKSVLR ELVTYLLFLI VLCILTYGMM 
      SSNVYYYTRM MSQLFLDTPV SKTEKTNFKT LSSMEDFWKF TEGSLLDGLY 
      WKMQPSNQTE ADNRSFIFYE NLLLGVPRIR QLRVRNGSCS IPQDLRDEIK 
      ECYDVYSVSS EDRAPFGPRN GTAWIYTSEK DLNGSSHWGI IATYSGAGYY 
      LDLSRTREET AAQVASLKKN VWLDRGTRAT FIDFSVYNAN INLFCVVRLL 
      VEFPATGGVI PSWQFQPLKL IRYVTTFDFF LAACEIIFCF FIFYYVVEEI 
      LEIRIHKLHY FRSFWNCLDV VIVVLSVVAI GINIYRTSNV EVLLQFLEDQ 
      NTFPNFEHLA YWQIQFNNIA AVTVFFVWIK LFKFINFNRT MSQLSTTMSR 
      CAKDLFGFAI MFFIIFLAYA QLAYLVFGTQ VDDFSTFQEC IFTQFRIILG 
      DINFAEIEEA NRVLGPIYFT TFVFFMFFIL LNMFLAIIND TYSEVKSDLA 
      QQKAEMELSD 
    </SEQ>
    <REGION seq_beg="24" pdb_beg="216" seq_end="27" pdb_end="219" type="2"/>
    <REGION seq_beg="28" pdb_beg="220" seq_end="50" pdb_end="242" type="H"/>
    <REGION seq_beg="51" pdb_beg="243" seq_end="103" pdb_end="295" type="1"/>
    <REGION seq_beg="110" pdb_beg="302" seq_end="279" pdb_end="471" type="1"/>
    <REGION seq_beg="280" pdb_beg="472" seq_end="301" pdb_end="493" type="H"/>
    <REGION seq_beg="312" pdb_beg="504" seq_end="312" pdb_end="504" type="2"/>
    <REGION seq_beg="313" pdb_beg="505" seq_end="336" pdb_end="528" type="H"/>
    <REGION seq_beg="337" pdb_beg="529" seq_end="362" pdb_end="554" type="1"/>
    <REGION seq_beg="363" pdb_beg="555" seq_end="388" pdb_end="580" type="H"/>
    <REGION seq_beg="389" pdb_beg="581" seq_end="397" pdb_end="589" type="F"/>
    <REGION seq_beg="398" pdb_beg="590" seq_end="428" pdb_end="620" type="H"/>
    <REGION seq_beg="429" pdb_beg="621" seq_end="436" pdb_end="628" type="1"/>
    <REGION seq_beg="437" pdb_beg="629" seq_end="454" pdb_end="646" type="L"/>
    <REGION seq_beg="455" pdb_beg="647" seq_end="460" pdb_end="652" type="F"/>
    <REGION seq_beg="461" pdb_beg="653" seq_end="461" pdb_end="653" type="1"/>
    <REGION seq_beg="462" pdb_beg="654" seq_end="489" pdb_end="681" type="H"/>
    <REGION seq_beg="490" pdb_beg="682" seq_end="502" pdb_end="694" type="2"/>
  </CHAIN>
  <CHAIN CHAINID="C" NUM_TM="6" TYPE="alpha">
    <SEQ>
      GAMGSRGLWG TRLMEESSTN REKYLKSVLR ELVTYLLFLI VLCILTYGMM 
      SSNVYYYTRM MSQLFLDTPV SKTEKTNFKT LSSMEDFWKF TEGSLLDGLY 
      WKMQPSNQTE ADNRSFIFYE NLLLGVPRIR QLRVRNGSCS IPQDLRDEIK 
      ECYDVYSVSS EDRAPFGPRN GTAWIYTSEK DLNGSSHWGI IATYSGAGYY 
      LDLSRTREET AAQVASLKKN VWLDRGTRAT FIDFSVYNAN INLFCVVRLL 
      VEFPATGGVI PSWQFQPLKL IRYVTTFDFF LAACEIIFCF FIFYYVVEEI 
      LEIRIHKLHY FRSFWNCLDV VIVVLSVVAI GINIYRTSNV EVLLQFLEDQ 
      NTFPNFEHLA YWQIQFNNIA AVTVFFVWIK LFKFINFNRT MSQLSTTMSR 
      CAKDLFGFAI MFFIIFLAYA QLAYLVFGTQ VDDFSTFQEC IFTQFRIILG 
      DINFAEIEEA NRVLGPIYFT TFVFFMFFIL LNMFLAIIND TYSEVKSDLA 
      QQKAEMELSD 
    </SEQ>
    <REGION seq_beg="24" pdb_beg="216" seq_end="27" pdb_end="219" type="2"/>
    <REGION seq_beg="28" pdb_beg="220" seq_end="50" pdb_end="242" type="H"/>
    <REGION seq_beg="51" pdb_beg="243" seq_end="103" pdb_end="295" type="1"/>
    <REGION seq_beg="110" pdb_beg="302" seq_end="279" pdb_end="471" type="1"/>
    <REGION seq_beg="280" pdb_beg="472" seq_end="301" pdb_end="493" type="H"/>
    <REGION seq_beg="312" pdb_beg="504" seq_end="312" pdb_end="504" type="2"/>
    <REGION seq_beg="313" pdb_beg="505" seq_end="336" pdb_end="528" type="H"/>
    <REGION seq_beg="337" pdb_beg="529" seq_end="362" pdb_end="554" type="1"/>
    <REGION seq_beg="363" pdb_beg="555" seq_end="388" pdb_end="580" type="H"/>
    <REGION seq_beg="389" pdb_beg="581" seq_end="397" pdb_end="589" type="F"/>
    <REGION seq_beg="398" pdb_beg="590" seq_end="428" pdb_end="620" type="H"/>
    <REGION seq_beg="429" pdb_beg="621" seq_end="436" pdb_end="628" type="1"/>
    <REGION seq_beg="437" pdb_beg="629" seq_end="454" pdb_end="646" type="L"/>
    <REGION seq_beg="455" pdb_beg="647" seq_end="460" pdb_end="652" type="F"/>
    <REGION seq_beg="461" pdb_beg="653" seq_end="461" pdb_end="653" type="1"/>
    <REGION seq_beg="462" pdb_beg="654" seq_end="489" pdb_end="681" type="H"/>
    <REGION seq_beg="490" pdb_beg="682" seq_end="502" pdb_end="694" type="2"/>
  </CHAIN>
  <CHAIN CHAINID="D" NUM_TM="6" TYPE="alpha">
    <SEQ>
      GAMGSRGLWG TRLMEESSTN REKYLKSVLR ELVTYLLFLI VLCILTYGMM 
      SSNVYYYTRM MSQLFLDTPV SKTEKTNFKT LSSMEDFWKF TEGSLLDGLY 
      WKMQPSNQTE ADNRSFIFYE NLLLGVPRIR QLRVRNGSCS IPQDLRDEIK 
      ECYDVYSVSS EDRAPFGPRN GTAWIYTSEK DLNGSSHWGI IATYSGAGYY 
      LDLSRTREET AAQVASLKKN VWLDRGTRAT FIDFSVYNAN INLFCVVRLL 
      VEFPATGGVI PSWQFQPLKL IRYVTTFDFF LAACEIIFCF FIFYYVVEEI 
      LEIRIHKLHY FRSFWNCLDV VIVVLSVVAI GINIYRTSNV EVLLQFLEDQ 
      NTFPNFEHLA YWQIQFNNIA AVTVFFVWIK LFKFINFNRT MSQLSTTMSR 
      CAKDLFGFAI MFFIIFLAYA QLAYLVFGTQ VDDFSTFQEC IFTQFRIILG 
      DINFAEIEEA NRVLGPIYFT TFVFFMFFIL LNMFLAIIND TYSEVKSDLA 
      QQKAEMELSD 
    </SEQ>
    <REGION seq_beg="24" pdb_beg="216" seq_end="27" pdb_end="219" type="2"/>
    <REGION seq_beg="28" pdb_beg="220" seq_end="50" pdb_end="242" type="H"/>
    <REGION seq_beg="51" pdb_beg="243" seq_end="103" pdb_end="295" type="1"/>
    <REGION seq_beg="110" pdb_beg="302" seq_end="279" pdb_end="471" type="1"/>
    <REGION seq_beg="280" pdb_beg="472" seq_end="301" pdb_end="493" type="H"/>
    <REGION seq_beg="312" pdb_beg="504" seq_end="312" pdb_end="504" type="2"/>
    <REGION seq_beg="313" pdb_beg="505" seq_end="336" pdb_end="528" type="H"/>
    <REGION seq_beg="337" pdb_beg="529" seq_end="362" pdb_end="554" type="1"/>
    <REGION seq_beg="363" pdb_beg="555" seq_end="388" pdb_end="580" type="H"/>
    <REGION seq_beg="389" pdb_beg="581" seq_end="397" pdb_end="589" type="F"/>
    <REGION seq_beg="398" pdb_beg="590" seq_end="428" pdb_end="620" type="H"/>
    <REGION seq_beg="429" pdb_beg="621" seq_end="436" pdb_end="628" type="1"/>
    <REGION seq_beg="437" pdb_beg="629" seq_end="454" pdb_end="646" type="L"/>
    <REGION seq_beg="455" pdb_beg="647" seq_end="460" pdb_end="652" type="F"/>
    <REGION seq_beg="461" pdb_beg="653" seq_end="461" pdb_end="653" type="1"/>
    <REGION seq_beg="462" pdb_beg="654" seq_end="489" pdb_end="681" type="H"/>
    <REGION seq_beg="490" pdb_beg="682" seq_end="502" pdb_end="694" type="2"/>
  </CHAIN>
</pdbtm>
Overview
5t4d
PDB code:5t4d
Chain(s):A[6], B[6], C[6], D[6]
PDBTM type:Tm_Alpha
Title:CRYO-EM STRUCTURE OF POLYCYSTIC KIDNEY DISEASE PROTEIN 2 (PKD2), RESIDUES 198-703
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