PDBTM: Protein Data Bank of Transmembrane Proteins
PDBTM version: 2018-09-21
Number of transmembrane proteins: 3846 (alpha: 3415 , beta: 411 )
Content of 5t4d
<?xml version="1.0" encoding="iso-8859-1"?>
<pdbtm xmlns="http://pdbtm.enzim.hu" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://pdbtm_data.enzim.hu/pdbtm.xsd pdbtm.xsd" ID="5t4d" TMP="yes">
<COPYRIGHT>
All information, data and files are copyright. PDBTM database is
produced in the Institute of Enzymology, Budapest, Hungary. There
are no restrictions on its use by non-profit institutions as long
as its content is in no way modified and this statement is not
removed from entries. Usage by and for commercial entities requires
a license agreement (send an email to pdbtm at enzim dot hu).
</COPYRIGHT>
<CREATE_DATE>2016-12-12</CREATE_DATE>
<MODIFICATION>
<DATE>2016-12-12</DATE>
<DESCR>Interfacial helix detected.</DESCR>
</MODIFICATION>
<RAWRES>
<TMRES>68.33</TMRES>
<TMTYPE>Tm_Alpha</TMTYPE>
<SPRES>Unknown</SPRES>
<PDBKWRES>no</PDBKWRES>
</RAWRES>
<MEMBRANE>
<NORMAL X="0.00058084" Y="0.00008505" Z="18.00000000"/>
<TMATRIX>
<ROWX X="1.00000000" Y="0.00000000" Z="0.00000000" T="-116.69802094"/>
<ROWY X="0.00000000" Y="1.00000000" Z="0.00000000" T="-116.69994354"/>
<ROWZ X="0.00000000" Y="0.00000000" Z="1.00000000" T="-129.86949158"/>
</TMATRIX>
</MEMBRANE>
<CHAIN CHAINID="A" NUM_TM="6" TYPE="alpha">
<SEQ>
GAMGSRGLWG TRLMEESSTN REKYLKSVLR ELVTYLLFLI VLCILTYGMM
SSNVYYYTRM MSQLFLDTPV SKTEKTNFKT LSSMEDFWKF TEGSLLDGLY
WKMQPSNQTE ADNRSFIFYE NLLLGVPRIR QLRVRNGSCS IPQDLRDEIK
ECYDVYSVSS EDRAPFGPRN GTAWIYTSEK DLNGSSHWGI IATYSGAGYY
LDLSRTREET AAQVASLKKN VWLDRGTRAT FIDFSVYNAN INLFCVVRLL
VEFPATGGVI PSWQFQPLKL IRYVTTFDFF LAACEIIFCF FIFYYVVEEI
LEIRIHKLHY FRSFWNCLDV VIVVLSVVAI GINIYRTSNV EVLLQFLEDQ
NTFPNFEHLA YWQIQFNNIA AVTVFFVWIK LFKFINFNRT MSQLSTTMSR
CAKDLFGFAI MFFIIFLAYA QLAYLVFGTQ VDDFSTFQEC IFTQFRIILG
DINFAEIEEA NRVLGPIYFT TFVFFMFFIL LNMFLAIIND TYSEVKSDLA
QQKAEMELSD
</SEQ>
<REGION seq_beg="24" pdb_beg="216" seq_end="27" pdb_end="219" type="2"/>
<REGION seq_beg="28" pdb_beg="220" seq_end="50" pdb_end="242" type="H"/>
<REGION seq_beg="51" pdb_beg="243" seq_end="103" pdb_end="295" type="1"/>
<REGION seq_beg="110" pdb_beg="302" seq_end="279" pdb_end="471" type="1"/>
<REGION seq_beg="280" pdb_beg="472" seq_end="301" pdb_end="493" type="H"/>
<REGION seq_beg="312" pdb_beg="504" seq_end="312" pdb_end="504" type="2"/>
<REGION seq_beg="313" pdb_beg="505" seq_end="336" pdb_end="528" type="H"/>
<REGION seq_beg="337" pdb_beg="529" seq_end="362" pdb_end="554" type="1"/>
<REGION seq_beg="363" pdb_beg="555" seq_end="388" pdb_end="580" type="H"/>
<REGION seq_beg="389" pdb_beg="581" seq_end="397" pdb_end="589" type="F"/>
<REGION seq_beg="398" pdb_beg="590" seq_end="428" pdb_end="620" type="H"/>
<REGION seq_beg="429" pdb_beg="621" seq_end="436" pdb_end="628" type="1"/>
<REGION seq_beg="437" pdb_beg="629" seq_end="454" pdb_end="646" type="L"/>
<REGION seq_beg="455" pdb_beg="647" seq_end="460" pdb_end="652" type="F"/>
<REGION seq_beg="461" pdb_beg="653" seq_end="461" pdb_end="653" type="1"/>
<REGION seq_beg="462" pdb_beg="654" seq_end="489" pdb_end="681" type="H"/>
<REGION seq_beg="490" pdb_beg="682" seq_end="502" pdb_end="694" type="2"/>
</CHAIN>
<CHAIN CHAINID="B" NUM_TM="6" TYPE="alpha">
<SEQ>
GAMGSRGLWG TRLMEESSTN REKYLKSVLR ELVTYLLFLI VLCILTYGMM
SSNVYYYTRM MSQLFLDTPV SKTEKTNFKT LSSMEDFWKF TEGSLLDGLY
WKMQPSNQTE ADNRSFIFYE NLLLGVPRIR QLRVRNGSCS IPQDLRDEIK
ECYDVYSVSS EDRAPFGPRN GTAWIYTSEK DLNGSSHWGI IATYSGAGYY
LDLSRTREET AAQVASLKKN VWLDRGTRAT FIDFSVYNAN INLFCVVRLL
VEFPATGGVI PSWQFQPLKL IRYVTTFDFF LAACEIIFCF FIFYYVVEEI
LEIRIHKLHY FRSFWNCLDV VIVVLSVVAI GINIYRTSNV EVLLQFLEDQ
NTFPNFEHLA YWQIQFNNIA AVTVFFVWIK LFKFINFNRT MSQLSTTMSR
CAKDLFGFAI MFFIIFLAYA QLAYLVFGTQ VDDFSTFQEC IFTQFRIILG
DINFAEIEEA NRVLGPIYFT TFVFFMFFIL LNMFLAIIND TYSEVKSDLA
QQKAEMELSD
</SEQ>
<REGION seq_beg="24" pdb_beg="216" seq_end="27" pdb_end="219" type="2"/>
<REGION seq_beg="28" pdb_beg="220" seq_end="50" pdb_end="242" type="H"/>
<REGION seq_beg="51" pdb_beg="243" seq_end="103" pdb_end="295" type="1"/>
<REGION seq_beg="110" pdb_beg="302" seq_end="279" pdb_end="471" type="1"/>
<REGION seq_beg="280" pdb_beg="472" seq_end="301" pdb_end="493" type="H"/>
<REGION seq_beg="312" pdb_beg="504" seq_end="312" pdb_end="504" type="2"/>
<REGION seq_beg="313" pdb_beg="505" seq_end="336" pdb_end="528" type="H"/>
<REGION seq_beg="337" pdb_beg="529" seq_end="362" pdb_end="554" type="1"/>
<REGION seq_beg="363" pdb_beg="555" seq_end="388" pdb_end="580" type="H"/>
<REGION seq_beg="389" pdb_beg="581" seq_end="397" pdb_end="589" type="F"/>
<REGION seq_beg="398" pdb_beg="590" seq_end="428" pdb_end="620" type="H"/>
<REGION seq_beg="429" pdb_beg="621" seq_end="436" pdb_end="628" type="1"/>
<REGION seq_beg="437" pdb_beg="629" seq_end="454" pdb_end="646" type="L"/>
<REGION seq_beg="455" pdb_beg="647" seq_end="460" pdb_end="652" type="F"/>
<REGION seq_beg="461" pdb_beg="653" seq_end="461" pdb_end="653" type="1"/>
<REGION seq_beg="462" pdb_beg="654" seq_end="489" pdb_end="681" type="H"/>
<REGION seq_beg="490" pdb_beg="682" seq_end="502" pdb_end="694" type="2"/>
</CHAIN>
<CHAIN CHAINID="C" NUM_TM="6" TYPE="alpha">
<SEQ>
GAMGSRGLWG TRLMEESSTN REKYLKSVLR ELVTYLLFLI VLCILTYGMM
SSNVYYYTRM MSQLFLDTPV SKTEKTNFKT LSSMEDFWKF TEGSLLDGLY
WKMQPSNQTE ADNRSFIFYE NLLLGVPRIR QLRVRNGSCS IPQDLRDEIK
ECYDVYSVSS EDRAPFGPRN GTAWIYTSEK DLNGSSHWGI IATYSGAGYY
LDLSRTREET AAQVASLKKN VWLDRGTRAT FIDFSVYNAN INLFCVVRLL
VEFPATGGVI PSWQFQPLKL IRYVTTFDFF LAACEIIFCF FIFYYVVEEI
LEIRIHKLHY FRSFWNCLDV VIVVLSVVAI GINIYRTSNV EVLLQFLEDQ
NTFPNFEHLA YWQIQFNNIA AVTVFFVWIK LFKFINFNRT MSQLSTTMSR
CAKDLFGFAI MFFIIFLAYA QLAYLVFGTQ VDDFSTFQEC IFTQFRIILG
DINFAEIEEA NRVLGPIYFT TFVFFMFFIL LNMFLAIIND TYSEVKSDLA
QQKAEMELSD
</SEQ>
<REGION seq_beg="24" pdb_beg="216" seq_end="27" pdb_end="219" type="2"/>
<REGION seq_beg="28" pdb_beg="220" seq_end="50" pdb_end="242" type="H"/>
<REGION seq_beg="51" pdb_beg="243" seq_end="103" pdb_end="295" type="1"/>
<REGION seq_beg="110" pdb_beg="302" seq_end="279" pdb_end="471" type="1"/>
<REGION seq_beg="280" pdb_beg="472" seq_end="301" pdb_end="493" type="H"/>
<REGION seq_beg="312" pdb_beg="504" seq_end="312" pdb_end="504" type="2"/>
<REGION seq_beg="313" pdb_beg="505" seq_end="336" pdb_end="528" type="H"/>
<REGION seq_beg="337" pdb_beg="529" seq_end="362" pdb_end="554" type="1"/>
<REGION seq_beg="363" pdb_beg="555" seq_end="388" pdb_end="580" type="H"/>
<REGION seq_beg="389" pdb_beg="581" seq_end="397" pdb_end="589" type="F"/>
<REGION seq_beg="398" pdb_beg="590" seq_end="428" pdb_end="620" type="H"/>
<REGION seq_beg="429" pdb_beg="621" seq_end="436" pdb_end="628" type="1"/>
<REGION seq_beg="437" pdb_beg="629" seq_end="454" pdb_end="646" type="L"/>
<REGION seq_beg="455" pdb_beg="647" seq_end="460" pdb_end="652" type="F"/>
<REGION seq_beg="461" pdb_beg="653" seq_end="461" pdb_end="653" type="1"/>
<REGION seq_beg="462" pdb_beg="654" seq_end="489" pdb_end="681" type="H"/>
<REGION seq_beg="490" pdb_beg="682" seq_end="502" pdb_end="694" type="2"/>
</CHAIN>
<CHAIN CHAINID="D" NUM_TM="6" TYPE="alpha">
<SEQ>
GAMGSRGLWG TRLMEESSTN REKYLKSVLR ELVTYLLFLI VLCILTYGMM
SSNVYYYTRM MSQLFLDTPV SKTEKTNFKT LSSMEDFWKF TEGSLLDGLY
WKMQPSNQTE ADNRSFIFYE NLLLGVPRIR QLRVRNGSCS IPQDLRDEIK
ECYDVYSVSS EDRAPFGPRN GTAWIYTSEK DLNGSSHWGI IATYSGAGYY
LDLSRTREET AAQVASLKKN VWLDRGTRAT FIDFSVYNAN INLFCVVRLL
VEFPATGGVI PSWQFQPLKL IRYVTTFDFF LAACEIIFCF FIFYYVVEEI
LEIRIHKLHY FRSFWNCLDV VIVVLSVVAI GINIYRTSNV EVLLQFLEDQ
NTFPNFEHLA YWQIQFNNIA AVTVFFVWIK LFKFINFNRT MSQLSTTMSR
CAKDLFGFAI MFFIIFLAYA QLAYLVFGTQ VDDFSTFQEC IFTQFRIILG
DINFAEIEEA NRVLGPIYFT TFVFFMFFIL LNMFLAIIND TYSEVKSDLA
QQKAEMELSD
</SEQ>
<REGION seq_beg="24" pdb_beg="216" seq_end="27" pdb_end="219" type="2"/>
<REGION seq_beg="28" pdb_beg="220" seq_end="50" pdb_end="242" type="H"/>
<REGION seq_beg="51" pdb_beg="243" seq_end="103" pdb_end="295" type="1"/>
<REGION seq_beg="110" pdb_beg="302" seq_end="279" pdb_end="471" type="1"/>
<REGION seq_beg="280" pdb_beg="472" seq_end="301" pdb_end="493" type="H"/>
<REGION seq_beg="312" pdb_beg="504" seq_end="312" pdb_end="504" type="2"/>
<REGION seq_beg="313" pdb_beg="505" seq_end="336" pdb_end="528" type="H"/>
<REGION seq_beg="337" pdb_beg="529" seq_end="362" pdb_end="554" type="1"/>
<REGION seq_beg="363" pdb_beg="555" seq_end="388" pdb_end="580" type="H"/>
<REGION seq_beg="389" pdb_beg="581" seq_end="397" pdb_end="589" type="F"/>
<REGION seq_beg="398" pdb_beg="590" seq_end="428" pdb_end="620" type="H"/>
<REGION seq_beg="429" pdb_beg="621" seq_end="436" pdb_end="628" type="1"/>
<REGION seq_beg="437" pdb_beg="629" seq_end="454" pdb_end="646" type="L"/>
<REGION seq_beg="455" pdb_beg="647" seq_end="460" pdb_end="652" type="F"/>
<REGION seq_beg="461" pdb_beg="653" seq_end="461" pdb_end="653" type="1"/>
<REGION seq_beg="462" pdb_beg="654" seq_end="489" pdb_end="681" type="H"/>
<REGION seq_beg="490" pdb_beg="682" seq_end="502" pdb_end="694" type="2"/>
</CHAIN>
</pdbtm>
Overview
5t4d
PDB code:5t4d
Chain(s):A[6], B[6], C[6], D[6]
PDBTM type:Tm_Alpha
Title:CRYO-EM STRUCTURE OF POLYCYSTIC KIDNEY DISEASE PROTEIN 2 (PKD2), RESIDUES 198-703
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