PDBTM: Protein Data Bank of Transmembrane Proteins
PDBTM version: 2018-02-09
Number of transmembrane proteins: 3525 (alpha: 3119 , beta: 389 )
Content of 5mkf
<?xml version="1.0" encoding="iso-8859-1"?>
<pdbtm xmlns="http://pdbtm.enzim.hu" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://pdbtm_data.enzim.hu/pdbtm.xsd pdbtm.xsd" ID="5mkf" TMP="yes">
<COPYRIGHT>
All information, data and files are copyright. PDBTM database is
produced in the Institute of Enzymology, Budapest, Hungary. There
are no restrictions on its use by non-profit institutions as long
as its content is in no way modified and this statement is not
removed from entries. Usage by and for commercial entities requires
a license agreement (send an email to pdbtm at enzim dot hu).
</COPYRIGHT>
<CREATE_DATE>2017-01-31</CREATE_DATE>
<MODIFICATION>
<DATE>2017-01-31</DATE>
<DESCR>Interfacial helix detected.</DESCR>
</MODIFICATION>
<RAWRES>
<TMRES>75.13</TMRES>
<TMTYPE>Tm_Alpha</TMTYPE>
<SPRES>Unknown</SPRES>
<PDBKWRES>no</PDBKWRES>
</RAWRES>
<MEMBRANE>
<NORMAL X="0.00283863" Y="-0.00050933" Z="18.00000000"/>
<TMATRIX>
<ROWX X="1.00000000" Y="0.00000000" Z="0.00000000" T="-95.76582336"/>
<ROWY X="0.00000000" Y="1.00000000" Z="0.00000000" T="-95.75875854"/>
<ROWZ X="0.00000000" Y="0.00000000" Z="1.00000000" T="-85.45343781"/>
</TMATRIX>
</MEMBRANE>
<CHAIN CHAINID="A" NUM_TM="6" TYPE="alpha">
<SEQ>
MVNSSRVQPQ QPGDAKRPPA PRAPDPGRLM AGCAAVGASL AAPGGLCEQR
GLEIEMQRIR QAAARDPPAG AAASPSPPLS SCSRQAWSRD NPGFEAEEEE
EEVEGEEGGM VVEMDVEWRP GSRRSAASSA VSSVGARSRG LGGYHGAGHP
SGRRRRREDQ GPPCPSPVGG GDPLHRHLPL EGQPPRVAWA ERLVRGLRGL
WGTRLMEESS TNREKYLKSV LRELVTYLLF LIVLCILTYG MMSSNVYYYT
RMMSQLFLDT PVSKTEKTNF KTLSSMEDFW KFTEGSLLDG LYWKMQPSNQ
TEADNRSFIF YENLLLGVPR IRQLRVRNGS CSIPQDLRDE IKECYDVYSV
SSEDRAPFGP RNGTAWIYTS EKDLNGSSHW GIIATYSGAG YYLDLSRTRE
ETAAQVASLK KNVWLDRGTR ATFIDFSVYN ANINLFCVVR LLVEFPATGG
VIPSWQFQPL KLIRYVTTFD FFLAACEIIF CFFIFYYVVE EILEIRIHKL
HYFRSFWNCL DVVIVVLSVV AIGINIYRTS NVEVLLQFLE DQNTFPNFEH
LAYWQIQFNN IAAVTVFFVW IKLFKFINFN RTMSQLSTTM SRCAKDLFGF
AIMFFIIFLA YAQLAYLVFG TQVDDFSTFQ ECIFTQFRII LGDINFAEIE
EANRVLGPIY FTTFVFFMFF ILLNMFLAII NDTYSEVKSD LAQQKAEMEL
SDLIRKGYHK ALVKLKLKKN TVDDISESLR QGGGKLNFDE LRQDLKGKGH
TDAEIEAIFT KYDQDGDQEL TEHEHQQMRD DLEKEREDLD LDHSSLPRPM
SSRSFPRSLD DSEEDDDEDS GHSSRRRGSI SSGVSYEEFQ VLVRRVDRME
HSIGSIVSKI DAVIVKLEIM ERAKLKRREV LGRLLDGVAE DERLGRDSEI
HREQMERLVR EELERWESDD AASQISHGLG TPVGLNGQPR PRSSRPSSSQ
STEGMEGAGG NGSSNVHV
</SEQ>
<REGION seq_beg="215" pdb_beg="215" seq_end="218" pdb_end="218" type="1"/>
<REGION seq_beg="219" pdb_beg="219" seq_end="242" pdb_end="242" type="H"/>
<REGION seq_beg="243" pdb_beg="243" seq_end="469" pdb_end="469" type="2"/>
<REGION seq_beg="470" pdb_beg="470" seq_end="497" pdb_end="497" type="H"/>
<REGION seq_beg="498" pdb_beg="498" seq_end="502" pdb_end="502" type="1"/>
<REGION seq_beg="503" pdb_beg="503" seq_end="529" pdb_end="529" type="H"/>
<REGION seq_beg="530" pdb_beg="530" seq_end="554" pdb_end="554" type="2"/>
<REGION seq_beg="555" pdb_beg="555" seq_end="580" pdb_end="580" type="H"/>
<REGION seq_beg="581" pdb_beg="581" seq_end="581" pdb_end="581" type="1"/>
<REGION seq_beg="582" pdb_beg="582" seq_end="593" pdb_end="593" type="F"/>
<REGION seq_beg="594" pdb_beg="594" seq_end="620" pdb_end="620" type="H"/>
<REGION seq_beg="621" pdb_beg="621" seq_end="625" pdb_end="625" type="2"/>
<REGION seq_beg="626" pdb_beg="626" seq_end="641" pdb_end="641" type="L"/>
<REGION seq_beg="642" pdb_beg="642" seq_end="645" pdb_end="645" type="2"/>
<REGION seq_beg="646" pdb_beg="646" seq_end="652" pdb_end="652" type="F"/>
<REGION seq_beg="653" pdb_beg="653" seq_end="653" pdb_end="653" type="2"/>
<REGION seq_beg="654" pdb_beg="654" seq_end="681" pdb_end="681" type="H"/>
<REGION seq_beg="682" pdb_beg="682" seq_end="695" pdb_end="695" type="1"/>
</CHAIN>
<CHAIN CHAINID="B" NUM_TM="6" TYPE="alpha">
<SEQ>
MVNSSRVQPQ QPGDAKRPPA PRAPDPGRLM AGCAAVGASL AAPGGLCEQR
GLEIEMQRIR QAAARDPPAG AAASPSPPLS SCSRQAWSRD NPGFEAEEEE
EEVEGEEGGM VVEMDVEWRP GSRRSAASSA VSSVGARSRG LGGYHGAGHP
SGRRRRREDQ GPPCPSPVGG GDPLHRHLPL EGQPPRVAWA ERLVRGLRGL
WGTRLMEESS TNREKYLKSV LRELVTYLLF LIVLCILTYG MMSSNVYYYT
RMMSQLFLDT PVSKTEKTNF KTLSSMEDFW KFTEGSLLDG LYWKMQPSNQ
TEADNRSFIF YENLLLGVPR IRQLRVRNGS CSIPQDLRDE IKECYDVYSV
SSEDRAPFGP RNGTAWIYTS EKDLNGSSHW GIIATYSGAG YYLDLSRTRE
ETAAQVASLK KNVWLDRGTR ATFIDFSVYN ANINLFCVVR LLVEFPATGG
VIPSWQFQPL KLIRYVTTFD FFLAACEIIF CFFIFYYVVE EILEIRIHKL
HYFRSFWNCL DVVIVVLSVV AIGINIYRTS NVEVLLQFLE DQNTFPNFEH
LAYWQIQFNN IAAVTVFFVW IKLFKFINFN RTMSQLSTTM SRCAKDLFGF
AIMFFIIFLA YAQLAYLVFG TQVDDFSTFQ ECIFTQFRII LGDINFAEIE
EANRVLGPIY FTTFVFFMFF ILLNMFLAII NDTYSEVKSD LAQQKAEMEL
SDLIRKGYHK ALVKLKLKKN TVDDISESLR QGGGKLNFDE LRQDLKGKGH
TDAEIEAIFT KYDQDGDQEL TEHEHQQMRD DLEKEREDLD LDHSSLPRPM
SSRSFPRSLD DSEEDDDEDS GHSSRRRGSI SSGVSYEEFQ VLVRRVDRME
HSIGSIVSKI DAVIVKLEIM ERAKLKRREV LGRLLDGVAE DERLGRDSEI
HREQMERLVR EELERWESDD AASQISHGLG TPVGLNGQPR PRSSRPSSSQ
STEGMEGAGG NGSSNVHV
</SEQ>
<REGION seq_beg="215" pdb_beg="215" seq_end="218" pdb_end="218" type="1"/>
<REGION seq_beg="219" pdb_beg="219" seq_end="244" pdb_end="244" type="H"/>
<REGION seq_beg="245" pdb_beg="245" seq_end="469" pdb_end="469" type="2"/>
<REGION seq_beg="470" pdb_beg="470" seq_end="496" pdb_end="496" type="H"/>
<REGION seq_beg="497" pdb_beg="497" seq_end="502" pdb_end="502" type="1"/>
<REGION seq_beg="503" pdb_beg="503" seq_end="529" pdb_end="529" type="H"/>
<REGION seq_beg="530" pdb_beg="530" seq_end="554" pdb_end="554" type="2"/>
<REGION seq_beg="555" pdb_beg="555" seq_end="580" pdb_end="580" type="H"/>
<REGION seq_beg="581" pdb_beg="581" seq_end="581" pdb_end="581" type="1"/>
<REGION seq_beg="582" pdb_beg="582" seq_end="593" pdb_end="593" type="F"/>
<REGION seq_beg="594" pdb_beg="594" seq_end="620" pdb_end="620" type="H"/>
<REGION seq_beg="621" pdb_beg="621" seq_end="625" pdb_end="625" type="2"/>
<REGION seq_beg="626" pdb_beg="626" seq_end="641" pdb_end="641" type="L"/>
<REGION seq_beg="642" pdb_beg="642" seq_end="645" pdb_end="645" type="2"/>
<REGION seq_beg="646" pdb_beg="646" seq_end="652" pdb_end="652" type="F"/>
<REGION seq_beg="653" pdb_beg="653" seq_end="653" pdb_end="653" type="2"/>
<REGION seq_beg="654" pdb_beg="654" seq_end="681" pdb_end="681" type="H"/>
<REGION seq_beg="682" pdb_beg="682" seq_end="695" pdb_end="695" type="1"/>
</CHAIN>
<CHAIN CHAINID="C" NUM_TM="6" TYPE="alpha">
<SEQ>
MVNSSRVQPQ QPGDAKRPPA PRAPDPGRLM AGCAAVGASL AAPGGLCEQR
GLEIEMQRIR QAAARDPPAG AAASPSPPLS SCSRQAWSRD NPGFEAEEEE
EEVEGEEGGM VVEMDVEWRP GSRRSAASSA VSSVGARSRG LGGYHGAGHP
SGRRRRREDQ GPPCPSPVGG GDPLHRHLPL EGQPPRVAWA ERLVRGLRGL
WGTRLMEESS TNREKYLKSV LRELVTYLLF LIVLCILTYG MMSSNVYYYT
RMMSQLFLDT PVSKTEKTNF KTLSSMEDFW KFTEGSLLDG LYWKMQPSNQ
TEADNRSFIF YENLLLGVPR IRQLRVRNGS CSIPQDLRDE IKECYDVYSV
SSEDRAPFGP RNGTAWIYTS EKDLNGSSHW GIIATYSGAG YYLDLSRTRE
ETAAQVASLK KNVWLDRGTR ATFIDFSVYN ANINLFCVVR LLVEFPATGG
VIPSWQFQPL KLIRYVTTFD FFLAACEIIF CFFIFYYVVE EILEIRIHKL
HYFRSFWNCL DVVIVVLSVV AIGINIYRTS NVEVLLQFLE DQNTFPNFEH
LAYWQIQFNN IAAVTVFFVW IKLFKFINFN RTMSQLSTTM SRCAKDLFGF
AIMFFIIFLA YAQLAYLVFG TQVDDFSTFQ ECIFTQFRII LGDINFAEIE
EANRVLGPIY FTTFVFFMFF ILLNMFLAII NDTYSEVKSD LAQQKAEMEL
SDLIRKGYHK ALVKLKLKKN TVDDISESLR QGGGKLNFDE LRQDLKGKGH
TDAEIEAIFT KYDQDGDQEL TEHEHQQMRD DLEKEREDLD LDHSSLPRPM
SSRSFPRSLD DSEEDDDEDS GHSSRRRGSI SSGVSYEEFQ VLVRRVDRME
HSIGSIVSKI DAVIVKLEIM ERAKLKRREV LGRLLDGVAE DERLGRDSEI
HREQMERLVR EELERWESDD AASQISHGLG TPVGLNGQPR PRSSRPSSSQ
STEGMEGAGG NGSSNVHV
</SEQ>
<REGION seq_beg="215" pdb_beg="215" seq_end="218" pdb_end="218" type="1"/>
<REGION seq_beg="219" pdb_beg="219" seq_end="242" pdb_end="242" type="H"/>
<REGION seq_beg="243" pdb_beg="243" seq_end="469" pdb_end="469" type="2"/>
<REGION seq_beg="470" pdb_beg="470" seq_end="497" pdb_end="497" type="H"/>
<REGION seq_beg="498" pdb_beg="498" seq_end="502" pdb_end="502" type="1"/>
<REGION seq_beg="503" pdb_beg="503" seq_end="529" pdb_end="529" type="H"/>
<REGION seq_beg="530" pdb_beg="530" seq_end="554" pdb_end="554" type="2"/>
<REGION seq_beg="555" pdb_beg="555" seq_end="580" pdb_end="580" type="H"/>
<REGION seq_beg="581" pdb_beg="581" seq_end="581" pdb_end="581" type="1"/>
<REGION seq_beg="582" pdb_beg="582" seq_end="593" pdb_end="593" type="F"/>
<REGION seq_beg="594" pdb_beg="594" seq_end="620" pdb_end="620" type="H"/>
<REGION seq_beg="621" pdb_beg="621" seq_end="625" pdb_end="625" type="2"/>
<REGION seq_beg="626" pdb_beg="626" seq_end="641" pdb_end="641" type="L"/>
<REGION seq_beg="642" pdb_beg="642" seq_end="645" pdb_end="645" type="2"/>
<REGION seq_beg="646" pdb_beg="646" seq_end="652" pdb_end="652" type="F"/>
<REGION seq_beg="653" pdb_beg="653" seq_end="653" pdb_end="653" type="2"/>
<REGION seq_beg="654" pdb_beg="654" seq_end="681" pdb_end="681" type="H"/>
<REGION seq_beg="682" pdb_beg="682" seq_end="695" pdb_end="695" type="1"/>
</CHAIN>
<CHAIN CHAINID="D" NUM_TM="6" TYPE="alpha">
<SEQ>
MVNSSRVQPQ QPGDAKRPPA PRAPDPGRLM AGCAAVGASL AAPGGLCEQR
GLEIEMQRIR QAAARDPPAG AAASPSPPLS SCSRQAWSRD NPGFEAEEEE
EEVEGEEGGM VVEMDVEWRP GSRRSAASSA VSSVGARSRG LGGYHGAGHP
SGRRRRREDQ GPPCPSPVGG GDPLHRHLPL EGQPPRVAWA ERLVRGLRGL
WGTRLMEESS TNREKYLKSV LRELVTYLLF LIVLCILTYG MMSSNVYYYT
RMMSQLFLDT PVSKTEKTNF KTLSSMEDFW KFTEGSLLDG LYWKMQPSNQ
TEADNRSFIF YENLLLGVPR IRQLRVRNGS CSIPQDLRDE IKECYDVYSV
SSEDRAPFGP RNGTAWIYTS EKDLNGSSHW GIIATYSGAG YYLDLSRTRE
ETAAQVASLK KNVWLDRGTR ATFIDFSVYN ANINLFCVVR LLVEFPATGG
VIPSWQFQPL KLIRYVTTFD FFLAACEIIF CFFIFYYVVE EILEIRIHKL
HYFRSFWNCL DVVIVVLSVV AIGINIYRTS NVEVLLQFLE DQNTFPNFEH
LAYWQIQFNN IAAVTVFFVW IKLFKFINFN RTMSQLSTTM SRCAKDLFGF
AIMFFIIFLA YAQLAYLVFG TQVDDFSTFQ ECIFTQFRII LGDINFAEIE
EANRVLGPIY FTTFVFFMFF ILLNMFLAII NDTYSEVKSD LAQQKAEMEL
SDLIRKGYHK ALVKLKLKKN TVDDISESLR QGGGKLNFDE LRQDLKGKGH
TDAEIEAIFT KYDQDGDQEL TEHEHQQMRD DLEKEREDLD LDHSSLPRPM
SSRSFPRSLD DSEEDDDEDS GHSSRRRGSI SSGVSYEEFQ VLVRRVDRME
HSIGSIVSKI DAVIVKLEIM ERAKLKRREV LGRLLDGVAE DERLGRDSEI
HREQMERLVR EELERWESDD AASQISHGLG TPVGLNGQPR PRSSRPSSSQ
STEGMEGAGG NGSSNVHV
</SEQ>
<REGION seq_beg="215" pdb_beg="215" seq_end="218" pdb_end="218" type="1"/>
<REGION seq_beg="219" pdb_beg="219" seq_end="242" pdb_end="242" type="H"/>
<REGION seq_beg="243" pdb_beg="243" seq_end="469" pdb_end="469" type="2"/>
<REGION seq_beg="470" pdb_beg="470" seq_end="497" pdb_end="497" type="H"/>
<REGION seq_beg="498" pdb_beg="498" seq_end="502" pdb_end="502" type="1"/>
<REGION seq_beg="503" pdb_beg="503" seq_end="529" pdb_end="529" type="H"/>
<REGION seq_beg="530" pdb_beg="530" seq_end="554" pdb_end="554" type="2"/>
<REGION seq_beg="555" pdb_beg="555" seq_end="580" pdb_end="580" type="H"/>
<REGION seq_beg="581" pdb_beg="581" seq_end="581" pdb_end="581" type="1"/>
<REGION seq_beg="582" pdb_beg="582" seq_end="593" pdb_end="593" type="F"/>
<REGION seq_beg="594" pdb_beg="594" seq_end="620" pdb_end="620" type="H"/>
<REGION seq_beg="621" pdb_beg="621" seq_end="625" pdb_end="625" type="2"/>
<REGION seq_beg="626" pdb_beg="626" seq_end="641" pdb_end="641" type="L"/>
<REGION seq_beg="642" pdb_beg="642" seq_end="645" pdb_end="645" type="2"/>
<REGION seq_beg="646" pdb_beg="646" seq_end="652" pdb_end="652" type="F"/>
<REGION seq_beg="653" pdb_beg="653" seq_end="653" pdb_end="653" type="2"/>
<REGION seq_beg="654" pdb_beg="654" seq_end="681" pdb_end="681" type="H"/>
<REGION seq_beg="682" pdb_beg="682" seq_end="695" pdb_end="695" type="1"/>
</CHAIN>
</pdbtm>
Overview
5mkf
PDB code:5mkf
Chain(s):A[6], B[6], C[6], D[6]
PDBTM type:Tm_Alpha
Title:CRYOEM STRUCTURE OF POLYCYSTIN-2 IN COMPLEX WITH CALCIUM AND LIPIDS
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Cross references