PDBTM: Protein Data Bank of Transmembrane Proteins
PDBTM version: 2018-02-09
Number of transmembrane proteins: 3525 (alpha: 3119 , beta: 389 )
Content of 5kmd
<?xml version="1.0" encoding="iso-8859-1"?>
<pdbtm xmlns="http://pdbtm.enzim.hu" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://pdbtm_data.enzim.hu/pdbtm.xsd pdbtm.xsd" ID="5kmd" TMP="yes">
<COPYRIGHT>
All information, data and files are copyright. PDBTM database is
produced in the Institute of Enzymology, Budapest, Hungary. There
are no restrictions on its use by non-profit institutions as long
as its content is in no way modified and this statement is not
removed from entries. Usage by and for commercial entities requires
a license agreement (send an email to pdbtm at enzim dot hu).
</COPYRIGHT>
<CREATE_DATE>2016-12-05</CREATE_DATE>
<MODIFICATION>
<DATE>2016-12-05</DATE>
<DESCR>Interfacial helix detected.</DESCR>
</MODIFICATION>
<RAWRES>
<TMRES>68.77</TMRES>
<TMTYPE>Tm_Alpha</TMTYPE>
<SPRES>Unknown</SPRES>
<PDBKWRES>no</PDBKWRES>
</RAWRES>
<MEMBRANE>
<NORMAL X="-0.84464633" Y="0.19605604" Z="13.22159767"/>
<TMATRIX>
<ROWX X="0.99796611" Y="0.00094516" Z="0.06373988" T="-62.76549530"/>
<ROWY X="0.00000000" Y="0.99989009" Z="-0.01482684" T="-30.77775383"/>
<ROWZ X="-0.06374689" Y="0.01479668" Z="0.99785644" T="-20.20850372"/>
</TMATRIX>
</MEMBRANE>
<CHAIN CHAINID="A" NUM_TM="6" TYPE="alpha">
<SEQ>
MDYKDDDDKG SLVPRGSHMY LRITNIVESS FFTKFIIYLI VLNGITMGLE
TSKTFMQSFG VYTTLFNQIV ITIFTIEIIL RIYVHRISFF KDPWSLFDFF
VVAISLVPTS SGFEILRVLR VLRLFRLVTA VPQMRKIVSA LISVIPGMLS
VIALMTLFFY IFAIMATQLF GERFPEWFGT LGESFYTLFQ VMTLDDWSNG
IVRPLMEVYP YAYVFFIPFI FVVTFVMINL VVAIIVDAMA ILNQKEEQHI
IDEVQSHEDN INNEIIKLRE EIVELKELIK TSLKN
</SEQ>
<REGION seq_beg="19" pdb_beg="1001" seq_end="21" pdb_end="1003" type="2"/>
<REGION seq_beg="22" pdb_beg="1004" seq_end="28" pdb_end="1010" type="F"/>
<REGION seq_beg="29" pdb_beg="1011" seq_end="35" pdb_end="1017" type="2"/>
<REGION seq_beg="36" pdb_beg="1018" seq_end="52" pdb_end="1034" type="H"/>
<REGION seq_beg="53" pdb_beg="1035" seq_end="59" pdb_end="1041" type="1"/>
<REGION seq_beg="60" pdb_beg="1042" seq_end="79" pdb_end="1061" type="H"/>
<REGION seq_beg="80" pdb_beg="1062" seq_end="94" pdb_end="1076" type="2"/>
<REGION seq_beg="95" pdb_beg="1077" seq_end="109" pdb_end="1091" type="H"/>
<REGION seq_beg="110" pdb_beg="1092" seq_end="113" pdb_end="1095" type="1"/>
<REGION seq_beg="114" pdb_beg="1096" seq_end="129" pdb_end="1111" type="H"/>
<REGION seq_beg="130" pdb_beg="1112" seq_end="131" pdb_end="1113" type="2"/>
<REGION seq_beg="132" pdb_beg="1114" seq_end="142" pdb_end="1124" type="F"/>
<REGION seq_beg="143" pdb_beg="1125" seq_end="148" pdb_end="1130" type="2"/>
<REGION seq_beg="149" pdb_beg="1131" seq_end="166" pdb_end="1148" type="H"/>
<REGION seq_beg="167" pdb_beg="1149" seq_end="181" pdb_end="1163" type="1"/>
<REGION seq_beg="182" pdb_beg="1164" seq_end="198" pdb_end="1180" type="L"/>
<REGION seq_beg="199" pdb_beg="1181" seq_end="213" pdb_end="1195" type="1"/>
<REGION seq_beg="214" pdb_beg="1196" seq_end="231" pdb_end="1213" type="H"/>
<REGION seq_beg="232" pdb_beg="1214" seq_end="237" pdb_end="1219" type="2"/>
</CHAIN>
<CHAIN CHAINID="B" NUM_TM="6" TYPE="alpha">
<SEQ>
MDYKDDDDKG SLVPRGSHMY LRITNIVESS FFTKFIIYLI VLNGITMGLE
TSKTFMQSFG VYTTLFNQIV ITIFTIEIIL RIYVHRISFF KDPWSLFDFF
VVAISLVPTS SGFEILRVLR VLRLFRLVTA VPQMRKIVSA LISVIPGMLS
VIALMTLFFY IFAIMATQLF GERFPEWFGT LGESFYTLFQ VMTLDDWSNG
IVRPLMEVYP YAYVFFIPFI FVVTFVMINL VVAIIVDAMA ILNQKEEQHI
IDEVQSHEDN INNEIIKLRE EIVELKELIK TSLKN
</SEQ>
<REGION seq_beg="19" pdb_beg="1001" seq_end="20" pdb_end="1002" type="2"/>
<REGION seq_beg="21" pdb_beg="1003" seq_end="27" pdb_end="1009" type="F"/>
<REGION seq_beg="28" pdb_beg="1010" seq_end="32" pdb_end="1014" type="2"/>
<REGION seq_beg="33" pdb_beg="1015" seq_end="51" pdb_end="1033" type="H"/>
<REGION seq_beg="52" pdb_beg="1034" seq_end="52" pdb_end="1034" type="1"/>
<REGION seq_beg="53" pdb_beg="1035" seq_end="59" pdb_end="1041" type="F"/>
<REGION seq_beg="60" pdb_beg="1042" seq_end="62" pdb_end="1044" type="1"/>
<REGION seq_beg="63" pdb_beg="1045" seq_end="82" pdb_end="1064" type="H"/>
<REGION seq_beg="83" pdb_beg="1065" seq_end="93" pdb_end="1075" type="2"/>
<REGION seq_beg="94" pdb_beg="1076" seq_end="108" pdb_end="1090" type="H"/>
<REGION seq_beg="109" pdb_beg="1091" seq_end="116" pdb_end="1098" type="1"/>
<REGION seq_beg="117" pdb_beg="1099" seq_end="131" pdb_end="1113" type="H"/>
<REGION seq_beg="132" pdb_beg="1114" seq_end="148" pdb_end="1130" type="F"/>
<REGION seq_beg="149" pdb_beg="1131" seq_end="166" pdb_end="1148" type="H"/>
<REGION seq_beg="167" pdb_beg="1149" seq_end="184" pdb_end="1166" type="1"/>
<REGION seq_beg="185" pdb_beg="1167" seq_end="198" pdb_end="1180" type="L"/>
<REGION seq_beg="199" pdb_beg="1181" seq_end="212" pdb_end="1194" type="1"/>
<REGION seq_beg="213" pdb_beg="1195" seq_end="231" pdb_end="1213" type="H"/>
<REGION seq_beg="232" pdb_beg="1214" seq_end="237" pdb_end="1219" type="2"/>
</CHAIN>
<CHAIN CHAINID="C" NUM_TM="6" TYPE="alpha">
<SEQ>
MDYKDDDDKG SLVPRGSHMY LRITNIVESS FFTKFIIYLI VLNGITMGLE
TSKTFMQSFG VYTTLFNQIV ITIFTIEIIL RIYVHRISFF KDPWSLFDFF
VVAISLVPTS SGFEILRVLR VLRLFRLVTA VPQMRKIVSA LISVIPGMLS
VIALMTLFFY IFAIMATQLF GERFPEWFGT LGESFYTLFQ VMTLDDWSNG
IVRPLMEVYP YAYVFFIPFI FVVTFVMINL VVAIIVDAMA ILNQKEEQHI
IDEVQSHEDN INNEIIKLRE EIVELKELIK TSLKN
</SEQ>
<REGION seq_beg="19" pdb_beg="1001" seq_end="19" pdb_end="1001" type="2"/>
<REGION seq_beg="20" pdb_beg="1002" seq_end="27" pdb_end="1009" type="F"/>
<REGION seq_beg="28" pdb_beg="1010" seq_end="31" pdb_end="1013" type="2"/>
<REGION seq_beg="32" pdb_beg="1014" seq_end="49" pdb_end="1031" type="H"/>
<REGION seq_beg="50" pdb_beg="1032" seq_end="52" pdb_end="1034" type="1"/>
<REGION seq_beg="53" pdb_beg="1035" seq_end="59" pdb_end="1041" type="F"/>
<REGION seq_beg="60" pdb_beg="1042" seq_end="63" pdb_end="1045" type="1"/>
<REGION seq_beg="64" pdb_beg="1046" seq_end="82" pdb_end="1064" type="H"/>
<REGION seq_beg="83" pdb_beg="1065" seq_end="93" pdb_end="1075" type="2"/>
<REGION seq_beg="94" pdb_beg="1076" seq_end="108" pdb_end="1090" type="H"/>
<REGION seq_beg="109" pdb_beg="1091" seq_end="115" pdb_end="1097" type="1"/>
<REGION seq_beg="116" pdb_beg="1098" seq_end="131" pdb_end="1113" type="H"/>
<REGION seq_beg="132" pdb_beg="1114" seq_end="148" pdb_end="1130" type="F"/>
<REGION seq_beg="149" pdb_beg="1131" seq_end="169" pdb_end="1151" type="H"/>
<REGION seq_beg="170" pdb_beg="1152" seq_end="181" pdb_end="1163" type="1"/>
<REGION seq_beg="182" pdb_beg="1164" seq_end="198" pdb_end="1180" type="L"/>
<REGION seq_beg="199" pdb_beg="1181" seq_end="201" pdb_end="1183" type="1"/>
<REGION seq_beg="202" pdb_beg="1184" seq_end="208" pdb_end="1190" type="F"/>
<REGION seq_beg="209" pdb_beg="1191" seq_end="211" pdb_end="1193" type="1"/>
<REGION seq_beg="212" pdb_beg="1194" seq_end="231" pdb_end="1213" type="H"/>
<REGION seq_beg="232" pdb_beg="1214" seq_end="237" pdb_end="1219" type="2"/>
</CHAIN>
<CHAIN CHAINID="D" NUM_TM="6" TYPE="alpha">
<SEQ>
MDYKDDDDKG SLVPRGSHMY LRITNIVESS FFTKFIIYLI VLNGITMGLE
TSKTFMQSFG VYTTLFNQIV ITIFTIEIIL RIYVHRISFF KDPWSLFDFF
VVAISLVPTS SGFEILRVLR VLRLFRLVTA VPQMRKIVSA LISVIPGMLS
VIALMTLFFY IFAIMATQLF GERFPEWFGT LGESFYTLFQ VMTLDDWSNG
IVRPLMEVYP YAYVFFIPFI FVVTFVMINL VVAIIVDAMA ILNQKEEQHI
IDEVQSHEDN INNEIIKLRE EIVELKELIK TSLKN
</SEQ>
<REGION seq_beg="19" pdb_beg="1001" seq_end="19" pdb_end="1001" type="2"/>
<REGION seq_beg="20" pdb_beg="1002" seq_end="27" pdb_end="1009" type="F"/>
<REGION seq_beg="28" pdb_beg="1010" seq_end="34" pdb_end="1016" type="2"/>
<REGION seq_beg="35" pdb_beg="1017" seq_end="51" pdb_end="1033" type="H"/>
<REGION seq_beg="52" pdb_beg="1034" seq_end="52" pdb_end="1034" type="1"/>
<REGION seq_beg="53" pdb_beg="1035" seq_end="60" pdb_end="1042" type="F"/>
<REGION seq_beg="61" pdb_beg="1043" seq_end="79" pdb_end="1061" type="H"/>
<REGION seq_beg="80" pdb_beg="1062" seq_end="96" pdb_end="1078" type="2"/>
<REGION seq_beg="97" pdb_beg="1079" seq_end="112" pdb_end="1094" type="H"/>
<REGION seq_beg="113" pdb_beg="1095" seq_end="113" pdb_end="1095" type="1"/>
<REGION seq_beg="114" pdb_beg="1096" seq_end="130" pdb_end="1112" type="H"/>
<REGION seq_beg="131" pdb_beg="1113" seq_end="131" pdb_end="1113" type="2"/>
<REGION seq_beg="132" pdb_beg="1114" seq_end="142" pdb_end="1124" type="F"/>
<REGION seq_beg="143" pdb_beg="1125" seq_end="151" pdb_end="1133" type="2"/>
<REGION seq_beg="152" pdb_beg="1134" seq_end="169" pdb_end="1151" type="H"/>
<REGION seq_beg="170" pdb_beg="1152" seq_end="180" pdb_end="1162" type="1"/>
<REGION seq_beg="181" pdb_beg="1163" seq_end="198" pdb_end="1180" type="L"/>
<REGION seq_beg="199" pdb_beg="1181" seq_end="208" pdb_end="1190" type="F"/>
<REGION seq_beg="209" pdb_beg="1191" seq_end="211" pdb_end="1193" type="1"/>
<REGION seq_beg="212" pdb_beg="1194" seq_end="231" pdb_end="1213" type="H"/>
<REGION seq_beg="232" pdb_beg="1214" seq_end="237" pdb_end="1219" type="2"/>
</CHAIN>
</pdbtm>
Overview
5kmd
PDB code:5kmd
Chain(s):A[6], B[6], C[6], D[6]
PDBTM type:Tm_Alpha
Title:STRUCTURE OF CAVAB IN COMPLEX WITH AMLODIPINE
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