PDBTM: Protein Data Bank of Transmembrane Proteins
PDBTM version: 2017-06-16
Number of transmembrane proteins: 3227 (alpha: 2848 , beta: 366 )
Content of 5kaf
<?xml version="1.0" encoding="iso-8859-1"?>
<pdbtm xmlns="http://pdbtm.enzim.hu" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://pdbtm_data.enzim.hu/pdbtm.xsd pdbtm.xsd" ID="5kaf" TMP="yes">
<COPYRIGHT>
All information, data and files are copyright. PDBTM database is
produced in the Institute of Enzymology, Budapest, Hungary. There
are no restrictions on its use by non-profit institutions as long
as its content is in no way modified and this statement is not
removed from entries. Usage by and for commercial entities requires
a license agreement (send an email to pdbtm at enzim dot hu).
</COPYRIGHT>
<CREATE_DATE>2016-12-13</CREATE_DATE>
<MODIFICATION>
<DATE>2016-12-13</DATE>
<DESCR>Interfacial helix detected.</DESCR>
</MODIFICATION>
<RAWRES>
<TMRES>73.15</TMRES>
<TMTYPE>Tm_Alpha</TMTYPE>
<SPRES>Unknown</SPRES>
<PDBKWRES>no</PDBKWRES>
</RAWRES>
<MEMBRANE>
<NORMAL X="0.08272159" Y="0.04737607" Z="11.99962234"/>
<TMATRIX>
<ROWX X="0.99999511" Y="0.00165727" Z="0.00268268" T="-120.23873901"/>
<ROWY X="0.00000000" Y="0.85075319" Z="-0.52556539" T="-152.32705688"/>
<ROWZ X="-0.00315330" Y="0.52556282" Z="0.85074902" T="-120.58475494"/>
</TMATRIX>
</MEMBRANE>
<CHAIN CHAINID="A" NUM_TM="5" TYPE="alpha">
<SEQ>
MTTTLQRRES ANLWERFCNW VTSTDNRLYV GWFGVIMIPT LLAATICFVI
AFIAAPPVDI DGIREPVSGS LLYGNNIITG AVVPSSNAIG LHFYPIWEAA
SLDEWLYNGG PYQLIIFHFL LGASCYMGRQ WELSYRLGMR PWICVAYSAP
LASAFAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHQL
GVAGVFGGAL FCAMHGSLVT SSLIRETTET ESANYGYKFG QEEETYNIVA
AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGVWFTALGI STMAFNLNGF
NFNHSVIDAK GNVINTWADI INRANLGMEV MHERNAHNFP LDLA
</SEQ>
<REGION seq_beg="11" pdb_beg="11" seq_end="12" pdb_end="12" type="1"/>
<REGION seq_beg="13" pdb_beg="13" seq_end="21" pdb_end="21" type="F"/>
<REGION seq_beg="22" pdb_beg="22" seq_end="30" pdb_end="30" type="1"/>
<REGION seq_beg="31" pdb_beg="31" seq_end="49" pdb_end="49" type="H"/>
<REGION seq_beg="50" pdb_beg="50" seq_end="115" pdb_end="115" type="2"/>
<REGION seq_beg="116" pdb_beg="116" seq_end="131" pdb_end="131" type="H"/>
<REGION seq_beg="132" pdb_beg="132" seq_end="142" pdb_end="142" type="1"/>
<REGION seq_beg="143" pdb_beg="143" seq_end="156" pdb_end="156" type="H"/>
<REGION seq_beg="157" pdb_beg="157" seq_end="175" pdb_end="175" type="2"/>
<REGION seq_beg="176" pdb_beg="176" seq_end="190" pdb_end="190" type="F"/>
<REGION seq_beg="191" pdb_beg="191" seq_end="196" pdb_end="196" type="2"/>
<REGION seq_beg="197" pdb_beg="197" seq_end="214" pdb_end="214" type="H"/>
<REGION seq_beg="215" pdb_beg="215" seq_end="274" pdb_end="274" type="1"/>
<REGION seq_beg="275" pdb_beg="275" seq_end="289" pdb_end="289" type="H"/>
<REGION seq_beg="290" pdb_beg="290" seq_end="344" pdb_end="344" type="2"/>
</CHAIN>
<CHAIN CHAINID="B" NUM_TM="6" TYPE="alpha">
<SEQ>
MGLPWYRVHT VLINDPGRLI AAHLMHTALV AGWAGSMALY ELATFDPSDP
VLNPMWRQGM FVLPFMARLG VTGSWSGWSI TGETGIDPGF WSFEGVALAH
IVLSGLLFLA ACWHWVYWDL ELFRDPRTGE PALDLPKMFG IHLFLAGLLC
FGFGAFHLTG LFGPGMWVSD PYGLTGSVQP VAPEWGPDGF NPYNPGGVVA
HHIAAGIVGI IAGLFHILVR PPQRLYKALR MGNIETVLSS SIAAVFFAAF
VVAGTMWYGS ATTPIELFGP TRYQWDSSYF QQEINRRVQA SLASGATLEE
AWSAIPEKLA FYDYIGNNPA KGGLFRTGPM NKGDGIAQAW KGHAVFRNKE
GEELFVRRMP AFFESFPVIL TDKNGVVKAD IPFRRAESKY SFEQQGVTVS
FYGGELNGQT FTDPPTVKSY ARKAIFGEIF EFDTETLNSD GIFRTSPRGW
FTFAHAVFAL LFFFGHIWHG ARTLFRDVFS GIDPELSPEQ VEWGFYQKVG
DVTTRRKEAV
</SEQ>
<REGION seq_beg="2" pdb_beg="2" seq_end="20" pdb_end="20" type="1"/>
<REGION seq_beg="21" pdb_beg="21" seq_end="36" pdb_end="36" type="H"/>
<REGION seq_beg="37" pdb_beg="37" seq_end="98" pdb_end="98" type="2"/>
<REGION seq_beg="99" pdb_beg="99" seq_end="112" pdb_end="112" type="H"/>
<REGION seq_beg="113" pdb_beg="113" seq_end="139" pdb_end="139" type="1"/>
<REGION seq_beg="140" pdb_beg="140" seq_end="156" pdb_end="156" type="H"/>
<REGION seq_beg="157" pdb_beg="157" seq_end="201" pdb_end="201" type="2"/>
<REGION seq_beg="202" pdb_beg="202" seq_end="216" pdb_end="216" type="H"/>
<REGION seq_beg="217" pdb_beg="217" seq_end="222" pdb_end="222" type="1"/>
<REGION seq_beg="223" pdb_beg="223" seq_end="228" pdb_end="228" type="F"/>
<REGION seq_beg="229" pdb_beg="229" seq_end="237" pdb_end="237" type="1"/>
<REGION seq_beg="238" pdb_beg="238" seq_end="252" pdb_end="252" type="H"/>
<REGION seq_beg="253" pdb_beg="253" seq_end="454" pdb_end="454" type="2"/>
<REGION seq_beg="455" pdb_beg="455" seq_end="470" pdb_end="470" type="H"/>
<REGION seq_beg="471" pdb_beg="471" seq_end="505" pdb_end="505" type="1"/>
</CHAIN>
<CHAIN CHAINID="C" NUM_TM="6" TYPE="alpha">
<SEQ>
MVTLSSNSIF ATNRDQESSG FAWWAGNARL INLSGKLLGA HVAHAGLIVF
WAGAMTLFEL AHFIPEKPMY EQGLILIPHI ATLGWGVGPG GEVVDTFPFF
VVGVVHLISS AVLGFGGVYH AIRGPETLEE YSSFFGYDWK DKNKMTTILG
FHLIVLGIGA LLLVAKAMFF GGLYDTWAPG GGDVRVITNP TLDPRVIFGY
LLKSPFGGEG WIVSVNNLED VVGGHIWIGL ICIAGGIWHI LTTPFGWARR
AFIWSGEAYL SYSLGALSMM GFIATCFVWF NNTVYPSEFY GPTGPEASQA
QAMTFLIRDQ KLGANVGSAQ GPTGLGKYLM RSPTGEIIFG GETMRFWDFR
GPWLEPLRGP NGLDLNKIKN DIQPWQERRA AEYMTHAPLG SLNSVGGVAT
EINSVNFVSP RSWLATSHFV LAFFFLVGHL WHAGRARAAA AGFEKGIDRE
SEPVLSMPSL D
</SEQ>
<REGION seq_beg="11" pdb_beg="23" seq_end="40" pdb_end="52" type="1"/>
<REGION seq_beg="41" pdb_beg="53" seq_end="55" pdb_end="67" type="H"/>
<REGION seq_beg="56" pdb_beg="68" seq_end="75" pdb_end="87" type="2"/>
<REGION seq_beg="76" pdb_beg="88" seq_end="82" pdb_end="94" type="F"/>
<REGION seq_beg="83" pdb_beg="95" seq_end="102" pdb_end="114" type="2"/>
<REGION seq_beg="103" pdb_beg="115" seq_end="118" pdb_end="130" type="H"/>
<REGION seq_beg="119" pdb_beg="131" seq_end="148" pdb_end="160" type="1"/>
<REGION seq_beg="149" pdb_beg="161" seq_end="163" pdb_end="175" type="H"/>
<REGION seq_beg="164" pdb_beg="176" seq_end="193" pdb_end="205" type="2"/>
<REGION seq_beg="194" pdb_beg="206" seq_end="201" pdb_end="213" type="F"/>
<REGION seq_beg="202" pdb_beg="214" seq_end="225" pdb_end="237" type="2"/>
<REGION seq_beg="226" pdb_beg="238" seq_end="240" pdb_end="252" type="H"/>
<REGION seq_beg="241" pdb_beg="253" seq_end="259" pdb_end="271" type="1"/>
<REGION seq_beg="260" pdb_beg="272" seq_end="274" pdb_end="286" type="H"/>
<REGION seq_beg="275" pdb_beg="287" seq_end="417" pdb_end="429" type="2"/>
<REGION seq_beg="418" pdb_beg="430" seq_end="433" pdb_end="445" type="H"/>
<REGION seq_beg="434" pdb_beg="446" seq_end="461" pdb_end="473" type="1"/>
</CHAIN>
<CHAIN CHAINID="D" NUM_TM="5" TYPE="alpha">
<SEQ>
MTIAIGRAPA ERGWFDILDD WLKRDRFVFV GWSGILLFPC AYLALGGWLT
GTTFVTSWYT HGLASSYLEG CNFLTVAVST PANSMGHSLL LLWGPEAQGD
FTRWCQLGGL WTFIALHGAF GLIGFMLRQF EIARLVGVRP YNAIAFSAPI
AVFVSVFLIY PLGQSSWFFA PSFGVAAIFR FLLFFQGFHN WTLNPFHMMG
VAGVLGGALL CAIHGATVEN TLFQDGEGAS TFRAFNPTQA EETYSMVTAN
RFWSQIFGIA FSNKRWLHFF MLFVPVTGLW MSAIGVVGLA LNLRSYDFIS
QEIRAAEDPE FETFYTKNLL LNEGIRAWMA PQDQPHENFV FPEEVLPRGN
AL
</SEQ>
<REGION seq_beg="12" pdb_beg="12" seq_end="13" pdb_end="13" type="1"/>
<REGION seq_beg="14" pdb_beg="14" seq_end="22" pdb_end="22" type="F"/>
<REGION seq_beg="23" pdb_beg="23" seq_end="33" pdb_end="33" type="1"/>
<REGION seq_beg="34" pdb_beg="34" seq_end="50" pdb_end="50" type="H"/>
<REGION seq_beg="51" pdb_beg="51" seq_end="100" pdb_end="100" type="2"/>
<REGION seq_beg="101" pdb_beg="101" seq_end="106" pdb_end="106" type="F"/>
<REGION seq_beg="107" pdb_beg="107" seq_end="113" pdb_end="113" type="2"/>
<REGION seq_beg="114" pdb_beg="114" seq_end="129" pdb_end="129" type="H"/>
<REGION seq_beg="130" pdb_beg="130" seq_end="142" pdb_end="142" type="1"/>
<REGION seq_beg="143" pdb_beg="143" seq_end="159" pdb_end="159" type="H"/>
<REGION seq_beg="160" pdb_beg="160" seq_end="174" pdb_end="174" type="2"/>
<REGION seq_beg="175" pdb_beg="175" seq_end="187" pdb_end="187" type="F"/>
<REGION seq_beg="188" pdb_beg="188" seq_end="195" pdb_end="195" type="2"/>
<REGION seq_beg="196" pdb_beg="196" seq_end="213" pdb_end="213" type="H"/>
<REGION seq_beg="214" pdb_beg="214" seq_end="270" pdb_end="270" type="1"/>
<REGION seq_beg="271" pdb_beg="271" seq_end="285" pdb_end="285" type="H"/>
<REGION seq_beg="286" pdb_beg="286" seq_end="352" pdb_end="352" type="2"/>
</CHAIN>
<CHAIN CHAINID="E" NUM_TM="1" TYPE="alpha">
<SEQ>
MAGTTGERPF SDIITSVRYW VIHSITIPAL FIAGWLFVST GLAYDVFGTP
RPDSYYAQEQ RSIPLVTDRF EAKQQVETFL EQLK
</SEQ>
<REGION seq_beg="4" pdb_beg="4" seq_end="20" pdb_end="20" type="1"/>
<REGION seq_beg="21" pdb_beg="21" seq_end="37" pdb_end="37" type="H"/>
<REGION seq_beg="38" pdb_beg="38" seq_end="41" pdb_end="41" type="2"/>
<REGION seq_beg="42" pdb_beg="42" seq_end="47" pdb_end="47" type="F"/>
<REGION seq_beg="48" pdb_beg="48" seq_end="84" pdb_end="84" type="2"/>
</CHAIN>
<CHAIN CHAINID="F" NUM_TM="1" TYPE="alpha">
<SEQ>
MTSNTPNQEP VSYPIFTVRW VAVHTLAVPT IFFLGAIAAM QFIQR
</SEQ>
<REGION seq_beg="12" pdb_beg="12" seq_end="21" pdb_end="21" type="1"/>
<REGION seq_beg="22" pdb_beg="22" seq_end="38" pdb_end="38" type="H"/>
<REGION seq_beg="39" pdb_beg="39" seq_end="45" pdb_end="45" type="2"/>
</CHAIN>
<CHAIN CHAINID="H" NUM_TM="1" TYPE="alpha">
<SEQ>
MARRTWLGDI LRPLNSEYGK VAPGWGTTPL MAVFMGLFLV FLLIILEIYN
STLILDGVNV SWKALG
</SEQ>
<REGION seq_beg="2" pdb_beg="2" seq_end="30" pdb_end="30" type="1"/>
<REGION seq_beg="31" pdb_beg="31" seq_end="46" pdb_end="46" type="H"/>
<REGION seq_beg="47" pdb_beg="47" seq_end="64" pdb_end="64" type="2"/>
</CHAIN>
<CHAIN CHAINID="I" NUM_TM="1" TYPE="alpha">
<SEQ>
METLKITVYI VVTFFVLLFV FGFLSGDPAR NPKRKDLE
</SEQ>
<REGION seq_beg="1" pdb_beg="1" seq_end="6" pdb_end="6" type="2"/>
<REGION seq_beg="7" pdb_beg="7" seq_end="23" pdb_end="23" type="H"/>
<REGION seq_beg="24" pdb_beg="24" seq_end="36" pdb_end="36" type="1"/>
</CHAIN>
<CHAIN CHAINID="J" NUM_TM="1" TYPE="alpha">
<SEQ>
MMSEGGRIPL WIVATVAGMG VIVIVGLFFY GAYAGLGSSL
</SEQ>
<REGION seq_beg="5" pdb_beg="5" seq_end="13" pdb_end="13" type="1"/>
<REGION seq_beg="14" pdb_beg="14" seq_end="28" pdb_end="28" type="H"/>
<REGION seq_beg="29" pdb_beg="29" seq_end="40" pdb_end="40" type="2"/>
</CHAIN>
<CHAIN CHAINID="K" NUM_TM="1" TYPE="alpha">
<SEQ>
MIDALVLVAK LPEAYAIFDP LVDVLPVIPV LFLALAFVWQ AAVGFR
</SEQ>
<REGION seq_beg="10" pdb_beg="10" seq_end="21" pdb_end="21" type="2"/>
<REGION seq_beg="22" pdb_beg="22" seq_end="38" pdb_end="38" type="H"/>
<REGION seq_beg="39" pdb_beg="39" seq_end="46" pdb_end="46" type="1"/>
</CHAIN>
<CHAIN CHAINID="L" NUM_TM="1" TYPE="alpha">
<SEQ>
MEPNPNRQPV ELNRTSLYLG LLLILVLALL FSSYFFN
</SEQ>
<REGION seq_beg="1" pdb_beg="1" seq_end="16" pdb_end="16" type="1"/>
<REGION seq_beg="17" pdb_beg="17" seq_end="32" pdb_end="32" type="H"/>
<REGION seq_beg="33" pdb_beg="33" seq_end="37" pdb_end="37" type="2"/>
</CHAIN>
<CHAIN CHAINID="M" NUM_TM="1" TYPE="alpha">
<SEQ>
MEVNQLGLIA TALFVLVPSV FLIILYVQTE SQQKSS
</SEQ>
<REGION seq_beg="1" pdb_beg="1" seq_end="9" pdb_end="9" type="2"/>
<REGION seq_beg="10" pdb_beg="10" seq_end="24" pdb_end="24" type="H"/>
<REGION seq_beg="25" pdb_beg="25" seq_end="33" pdb_end="33" type="1"/>
</CHAIN>
<CHAIN CHAINID="O" NUM_TM="0" TYPE="non_tm">
<SEQ>
MKYRILMATL LAVCLGIFSL SAPAFAAKQT LTYDDIVGTG LANKCPTLDD
TARGAYPIDS SQTYRIARLC LQPTTFLVKE EPKNKRQEAE FVPTKLVTRE
TTSLDQIQGE LKVNSDGSLT FVEEDGIDFQ PVTVQMAGGE RIPLLFTVKN
LVASTQPNVT SITTSTDFKG EFNVPSYRTA NFLDPKGRGL ASGYDSAIAL
PQAKEEELAR ANVKRFSLTK GQISLNVAKV DGRTGEIAGT FESEQLSDDD
MGAHEPHEVK IQGVFYASIE PA
</SEQ>
<REGION seq_beg="29" pdb_beg="3" seq_end="272" pdb_end="246" type="2"/>
</CHAIN>
<CHAIN CHAINID="T" NUM_TM="1" TYPE="alpha">
<SEQ>
METITYVFIF ACIIALFFFA IFFREPPRIT KK
</SEQ>
<REGION seq_beg="1" pdb_beg="1" seq_end="5" pdb_end="5" type="2"/>
<REGION seq_beg="6" pdb_beg="6" seq_end="21" pdb_end="21" type="H"/>
<REGION seq_beg="22" pdb_beg="22" seq_end="30" pdb_end="30" type="1"/>
</CHAIN>
<CHAIN CHAINID="U" NUM_TM="0" TYPE="non_tm">
<SEQ>
MQRLGRWLAL AYFVGVSLLG WINWSAPTLA ATASTEEELV NVVDEKLGTA
YGEKIDLNNT NIAAFIQYRG LYPTLAKLIV KNAPYESVED VLNIPGLTER
QKQILRENLE HFTVTEVETA LVEGGDRYNN GLYK
</SEQ>
<REGION seq_beg="38" pdb_beg="8" seq_end="134" pdb_end="104" type="2"/>
</CHAIN>
<CHAIN CHAINID="V" NUM_TM="0" TYPE="non_tm">
<SEQ>
MLKKCVWLAV ALCLCLWQFT MGTALAAELT PEVLTVPLNS EGKTITLTEK
QYLEGKRLFQ YACASCHVGG ITKTNPSLDL RTETLALATP PRDNIEGLVD
YMKNPTTYDG EQEIAEVHPS LRSADIFPKM RNLTEKDLVA IAGHILVEPK
ILGDKWGGGK VYY
</SEQ>
<REGION seq_beg="27" pdb_beg="1" seq_end="163" pdb_end="137" type="2"/>
</CHAIN>
<CHAIN CHAINID="Y" NUM_TM="1" TYPE="alpha">
<SEQ>
MGIFNGIIEF LSNINFEVIA QLTMIAMIGI AGPMIIFLLA VRRGNL
</SEQ>
<REGION seq_beg="17" pdb_beg="17" seq_end="19" pdb_end="19" type="2"/>
<REGION seq_beg="20" pdb_beg="20" seq_end="35" pdb_end="35" type="H"/>
<REGION seq_beg="36" pdb_beg="36" seq_end="46" pdb_end="46" type="1"/>
</CHAIN>
<CHAIN CHAINID="X" NUM_TM="1" TYPE="alpha">
<SEQ>
MTITPSLKGF FIGLLSGAVV LGLTFAVLIA ISQIDKVQRS L
</SEQ>
<REGION seq_beg="2" pdb_beg="2" seq_end="10" pdb_end="10" type="2"/>
<REGION seq_beg="11" pdb_beg="11" seq_end="27" pdb_end="27" type="H"/>
<REGION seq_beg="28" pdb_beg="28" seq_end="39" pdb_end="39" type="1"/>
</CHAIN>
<CHAIN CHAINID="Z" NUM_TM="2" TYPE="alpha">
<SEQ>
MTILFQLALA ALVILSFVMV IGVPVAYASP QDWDRSKQLI FLGSGLWIAL
VLVVGVLNFF VV
</SEQ>
<REGION seq_beg="1" pdb_beg="1" seq_end="4" pdb_end="4" type="2"/>
<REGION seq_beg="5" pdb_beg="5" seq_end="23" pdb_end="23" type="H"/>
<REGION seq_beg="24" pdb_beg="24" seq_end="42" pdb_end="42" type="1"/>
<REGION seq_beg="43" pdb_beg="43" seq_end="57" pdb_end="57" type="H"/>
<REGION seq_beg="58" pdb_beg="58" seq_end="62" pdb_end="62" type="2"/>
</CHAIN>
<CHAIN CHAINID="R" NUM_TM="1" TYPE="alpha">
<SEQ>
MDWRVLVVLL PVLLAAGWAV RNILPYAVKQ VQKLLQKAKA A
</SEQ>
<REGION seq_beg="2" pdb_beg="2" seq_end="5" pdb_end="5" type="2"/>
<REGION seq_beg="6" pdb_beg="6" seq_end="20" pdb_end="20" type="H"/>
<REGION seq_beg="21" pdb_beg="21" seq_end="35" pdb_end="35" type="1"/>
</CHAIN>
<CHAIN CHAINID="a" NUM_TM="5" TYPE="alpha">
<SEQ>
MTTTLQRRES ANLWERFCNW VTSTDNRLYV GWFGVIMIPT LLAATICFVI
AFIAAPPVDI DGIREPVSGS LLYGNNIITG AVVPSSNAIG LHFYPIWEAA
SLDEWLYNGG PYQLIIFHFL LGASCYMGRQ WELSYRLGMR PWICVAYSAP
LASAFAVFLI YPIGQGSFSD GMPLGISGTF NFMIVFQAEH NILMHPFHQL
GVAGVFGGAL FCAMHGSLVT SSLIRETTET ESANYGYKFG QEEETYNIVA
AHGYFGRLIF QYASFNNSRS LHFFLAAWPV VGVWFTALGI STMAFNLNGF
NFNHSVIDAK GNVINTWADI INRANLGMEV MHERNAHNFP LDLA
</SEQ>
<REGION seq_beg="11" pdb_beg="11" seq_end="12" pdb_end="12" type="1"/>
<REGION seq_beg="13" pdb_beg="13" seq_end="21" pdb_end="21" type="F"/>
<REGION seq_beg="22" pdb_beg="22" seq_end="30" pdb_end="30" type="1"/>
<REGION seq_beg="31" pdb_beg="31" seq_end="49" pdb_end="49" type="H"/>
<REGION seq_beg="50" pdb_beg="50" seq_end="115" pdb_end="115" type="2"/>
<REGION seq_beg="116" pdb_beg="116" seq_end="131" pdb_end="131" type="H"/>
<REGION seq_beg="132" pdb_beg="132" seq_end="142" pdb_end="142" type="1"/>
<REGION seq_beg="143" pdb_beg="143" seq_end="156" pdb_end="156" type="H"/>
<REGION seq_beg="157" pdb_beg="157" seq_end="175" pdb_end="175" type="2"/>
<REGION seq_beg="176" pdb_beg="176" seq_end="190" pdb_end="190" type="F"/>
<REGION seq_beg="191" pdb_beg="191" seq_end="196" pdb_end="196" type="2"/>
<REGION seq_beg="197" pdb_beg="197" seq_end="214" pdb_end="214" type="H"/>
<REGION seq_beg="215" pdb_beg="215" seq_end="274" pdb_end="274" type="1"/>
<REGION seq_beg="275" pdb_beg="275" seq_end="289" pdb_end="289" type="H"/>
<REGION seq_beg="290" pdb_beg="290" seq_end="344" pdb_end="344" type="2"/>
</CHAIN>
<CHAIN CHAINID="b" NUM_TM="6" TYPE="alpha">
<SEQ>
MGLPWYRVHT VLINDPGRLI AAHLMHTALV AGWAGSMALY ELATFDPSDP
VLNPMWRQGM FVLPFMARLG VTGSWSGWSI TGETGIDPGF WSFEGVALAH
IVLSGLLFLA ACWHWVYWDL ELFRDPRTGE PALDLPKMFG IHLFLAGLLC
FGFGAFHLTG LFGPGMWVSD PYGLTGSVQP VAPEWGPDGF NPYNPGGVVA
HHIAAGIVGI IAGLFHILVR PPQRLYKALR MGNIETVLSS SIAAVFFAAF
VVAGTMWYGS ATTPIELFGP TRYQWDSSYF QQEINRRVQA SLASGATLEE
AWSAIPEKLA FYDYIGNNPA KGGLFRTGPM NKGDGIAQAW KGHAVFRNKE
GEELFVRRMP AFFESFPVIL TDKNGVVKAD IPFRRAESKY SFEQQGVTVS
FYGGELNGQT FTDPPTVKSY ARKAIFGEIF EFDTETLNSD GIFRTSPRGW
FTFAHAVFAL LFFFGHIWHG ARTLFRDVFS GIDPELSPEQ VEWGFYQKVG
DVTTRRKEAV
</SEQ>
<REGION seq_beg="2" pdb_beg="2" seq_end="20" pdb_end="20" type="1"/>
<REGION seq_beg="21" pdb_beg="21" seq_end="36" pdb_end="36" type="H"/>
<REGION seq_beg="37" pdb_beg="37" seq_end="61" pdb_end="61" type="2"/>
<REGION seq_beg="62" pdb_beg="62" seq_end="68" pdb_end="68" type="F"/>
<REGION seq_beg="69" pdb_beg="69" seq_end="97" pdb_end="97" type="2"/>
<REGION seq_beg="98" pdb_beg="98" seq_end="112" pdb_end="112" type="H"/>
<REGION seq_beg="113" pdb_beg="113" seq_end="139" pdb_end="139" type="1"/>
<REGION seq_beg="140" pdb_beg="140" seq_end="156" pdb_end="156" type="H"/>
<REGION seq_beg="157" pdb_beg="157" seq_end="200" pdb_end="200" type="2"/>
<REGION seq_beg="201" pdb_beg="201" seq_end="215" pdb_end="215" type="H"/>
<REGION seq_beg="216" pdb_beg="216" seq_end="222" pdb_end="222" type="1"/>
<REGION seq_beg="223" pdb_beg="223" seq_end="228" pdb_end="228" type="F"/>
<REGION seq_beg="229" pdb_beg="229" seq_end="237" pdb_end="237" type="1"/>
<REGION seq_beg="238" pdb_beg="238" seq_end="252" pdb_end="252" type="H"/>
<REGION seq_beg="253" pdb_beg="253" seq_end="454" pdb_end="454" type="2"/>
<REGION seq_beg="455" pdb_beg="455" seq_end="470" pdb_end="470" type="H"/>
<REGION seq_beg="471" pdb_beg="471" seq_end="505" pdb_end="505" type="1"/>
</CHAIN>
<CHAIN CHAINID="c" NUM_TM="6" TYPE="alpha">
<SEQ>
MVTLSSNSIF ATNRDQESSG FAWWAGNARL INLSGKLLGA HVAHAGLIVF
WAGAMTLFEL AHFIPEKPMY EQGLILIPHI ATLGWGVGPG GEVVDTFPFF
VVGVVHLISS AVLGFGGVYH AIRGPETLEE YSSFFGYDWK DKNKMTTILG
FHLIVLGIGA LLLVAKAMFF GGLYDTWAPG GGDVRVITNP TLDPRVIFGY
LLKSPFGGEG WIVSVNNLED VVGGHIWIGL ICIAGGIWHI LTTPFGWARR
AFIWSGEAYL SYSLGALSMM GFIATCFVWF NNTVYPSEFY GPTGPEASQA
QAMTFLIRDQ KLGANVGSAQ GPTGLGKYLM RSPTGEIIFG GETMRFWDFR
GPWLEPLRGP NGLDLNKIKN DIQPWQERRA AEYMTHAPLG SLNSVGGVAT
EINSVNFVSP RSWLATSHFV LAFFFLVGHL WHAGRARAAA AGFEKGIDRE
SEPVLSMPSL D
</SEQ>
<REGION seq_beg="11" pdb_beg="23" seq_end="40" pdb_end="52" type="1"/>
<REGION seq_beg="41" pdb_beg="53" seq_end="55" pdb_end="67" type="H"/>
<REGION seq_beg="56" pdb_beg="68" seq_end="76" pdb_end="88" type="2"/>
<REGION seq_beg="77" pdb_beg="89" seq_end="82" pdb_end="94" type="F"/>
<REGION seq_beg="83" pdb_beg="95" seq_end="102" pdb_end="114" type="2"/>
<REGION seq_beg="103" pdb_beg="115" seq_end="118" pdb_end="130" type="H"/>
<REGION seq_beg="119" pdb_beg="131" seq_end="148" pdb_end="160" type="1"/>
<REGION seq_beg="149" pdb_beg="161" seq_end="162" pdb_end="174" type="H"/>
<REGION seq_beg="163" pdb_beg="175" seq_end="225" pdb_end="237" type="2"/>
<REGION seq_beg="226" pdb_beg="238" seq_end="240" pdb_end="252" type="H"/>
<REGION seq_beg="241" pdb_beg="253" seq_end="259" pdb_end="271" type="1"/>
<REGION seq_beg="260" pdb_beg="272" seq_end="274" pdb_end="286" type="H"/>
<REGION seq_beg="275" pdb_beg="287" seq_end="417" pdb_end="429" type="2"/>
<REGION seq_beg="418" pdb_beg="430" seq_end="433" pdb_end="445" type="H"/>
<REGION seq_beg="434" pdb_beg="446" seq_end="461" pdb_end="473" type="1"/>
</CHAIN>
<CHAIN CHAINID="d" NUM_TM="5" TYPE="alpha">
<SEQ>
MTIAIGRAPA ERGWFDILDD WLKRDRFVFV GWSGILLFPC AYLALGGWLT
GTTFVTSWYT HGLASSYLEG CNFLTVAVST PANSMGHSLL LLWGPEAQGD
FTRWCQLGGL WTFIALHGAF GLIGFMLRQF EIARLVGVRP YNAIAFSAPI
AVFVSVFLIY PLGQSSWFFA PSFGVAAIFR FLLFFQGFHN WTLNPFHMMG
VAGVLGGALL CAIHGATVEN TLFQDGEGAS TFRAFNPTQA EETYSMVTAN
RFWSQIFGIA FSNKRWLHFF MLFVPVTGLW MSAIGVVGLA LNLRSYDFIS
QEIRAAEDPE FETFYTKNLL LNEGIRAWMA PQDQPHENFV FPEEVLPRGN
AL
</SEQ>
<REGION seq_beg="12" pdb_beg="12" seq_end="13" pdb_end="13" type="1"/>
<REGION seq_beg="14" pdb_beg="14" seq_end="22" pdb_end="22" type="F"/>
<REGION seq_beg="23" pdb_beg="23" seq_end="33" pdb_end="33" type="1"/>
<REGION seq_beg="34" pdb_beg="34" seq_end="50" pdb_end="50" type="H"/>
<REGION seq_beg="51" pdb_beg="51" seq_end="100" pdb_end="100" type="2"/>
<REGION seq_beg="101" pdb_beg="101" seq_end="106" pdb_end="106" type="F"/>
<REGION seq_beg="107" pdb_beg="107" seq_end="112" pdb_end="112" type="2"/>
<REGION seq_beg="113" pdb_beg="113" seq_end="128" pdb_end="128" type="H"/>
<REGION seq_beg="129" pdb_beg="129" seq_end="142" pdb_end="142" type="1"/>
<REGION seq_beg="143" pdb_beg="143" seq_end="159" pdb_end="159" type="H"/>
<REGION seq_beg="160" pdb_beg="160" seq_end="174" pdb_end="174" type="2"/>
<REGION seq_beg="175" pdb_beg="175" seq_end="187" pdb_end="187" type="F"/>
<REGION seq_beg="188" pdb_beg="188" seq_end="195" pdb_end="195" type="2"/>
<REGION seq_beg="196" pdb_beg="196" seq_end="213" pdb_end="213" type="H"/>
<REGION seq_beg="214" pdb_beg="214" seq_end="270" pdb_end="270" type="1"/>
<REGION seq_beg="271" pdb_beg="271" seq_end="285" pdb_end="285" type="H"/>
<REGION seq_beg="286" pdb_beg="286" seq_end="352" pdb_end="352" type="2"/>
</CHAIN>
<CHAIN CHAINID="e" NUM_TM="1" TYPE="alpha">
<SEQ>
MAGTTGERPF SDIITSVRYW VIHSITIPAL FIAGWLFVST GLAYDVFGTP
RPDSYYAQEQ RSIPLVTDRF EAKQQVETFL EQLK
</SEQ>
<REGION seq_beg="3" pdb_beg="3" seq_end="22" pdb_end="22" type="1"/>
<REGION seq_beg="23" pdb_beg="23" seq_end="37" pdb_end="37" type="H"/>
<REGION seq_beg="38" pdb_beg="38" seq_end="41" pdb_end="41" type="2"/>
<REGION seq_beg="42" pdb_beg="42" seq_end="47" pdb_end="47" type="F"/>
<REGION seq_beg="48" pdb_beg="48" seq_end="84" pdb_end="84" type="2"/>
</CHAIN>
<CHAIN CHAINID="f" NUM_TM="1" TYPE="alpha">
<SEQ>
MTSNTPNQEP VSYPIFTVRW VAVHTLAVPT IFFLGAIAAM QFIQR
</SEQ>
<REGION seq_beg="12" pdb_beg="12" seq_end="21" pdb_end="21" type="1"/>
<REGION seq_beg="22" pdb_beg="22" seq_end="38" pdb_end="38" type="H"/>
<REGION seq_beg="39" pdb_beg="39" seq_end="45" pdb_end="45" type="2"/>
</CHAIN>
<CHAIN CHAINID="h" NUM_TM="1" TYPE="alpha">
<SEQ>
MARRTWLGDI LRPLNSEYGK VAPGWGTTPL MAVFMGLFLV FLLIILEIYN
STLILDGVNV SWKALG
</SEQ>
<REGION seq_beg="2" pdb_beg="2" seq_end="5" pdb_end="5" type="1"/>
<REGION seq_beg="6" pdb_beg="6" seq_end="11" pdb_end="11" type="F"/>
<REGION seq_beg="12" pdb_beg="12" seq_end="30" pdb_end="30" type="1"/>
<REGION seq_beg="31" pdb_beg="31" seq_end="46" pdb_end="46" type="H"/>
<REGION seq_beg="47" pdb_beg="47" seq_end="64" pdb_end="64" type="2"/>
</CHAIN>
<CHAIN CHAINID="i" NUM_TM="1" TYPE="alpha">
<SEQ>
METLKITVYI VVTFFVLLFV FGFLSGDPAR NPKRKDLE
</SEQ>
<REGION seq_beg="1" pdb_beg="1" seq_end="6" pdb_end="6" type="2"/>
<REGION seq_beg="7" pdb_beg="7" seq_end="24" pdb_end="24" type="H"/>
<REGION seq_beg="25" pdb_beg="25" seq_end="36" pdb_end="36" type="1"/>
</CHAIN>
<CHAIN CHAINID="j" NUM_TM="1" TYPE="alpha">
<SEQ>
MMSEGGRIPL WIVATVAGMG VIVIVGLFFY GAYAGLGSSL
</SEQ>
<REGION seq_beg="5" pdb_beg="5" seq_end="13" pdb_end="13" type="1"/>
<REGION seq_beg="14" pdb_beg="14" seq_end="28" pdb_end="28" type="H"/>
<REGION seq_beg="29" pdb_beg="29" seq_end="40" pdb_end="40" type="2"/>
</CHAIN>
<CHAIN CHAINID="k" NUM_TM="1" TYPE="alpha">
<SEQ>
MIDALVLVAK LPEAYAIFDP LVDVLPVIPV LFLALAFVWQ AAVGFR
</SEQ>
<REGION seq_beg="10" pdb_beg="10" seq_end="21" pdb_end="21" type="2"/>
<REGION seq_beg="22" pdb_beg="22" seq_end="38" pdb_end="38" type="H"/>
<REGION seq_beg="39" pdb_beg="39" seq_end="46" pdb_end="46" type="1"/>
</CHAIN>
<CHAIN CHAINID="l" NUM_TM="1" TYPE="alpha">
<SEQ>
MEPNPNRQPV ELNRTSLYLG LLLILVLALL FSSYFFN
</SEQ>
<REGION seq_beg="1" pdb_beg="1" seq_end="16" pdb_end="16" type="1"/>
<REGION seq_beg="17" pdb_beg="17" seq_end="32" pdb_end="32" type="H"/>
<REGION seq_beg="33" pdb_beg="33" seq_end="37" pdb_end="37" type="2"/>
</CHAIN>
<CHAIN CHAINID="m" NUM_TM="1" TYPE="alpha">
<SEQ>
MEVNQLGLIA TALFVLVPSV FLIILYVQTE SQQKSS
</SEQ>
<REGION seq_beg="1" pdb_beg="1" seq_end="9" pdb_end="9" type="2"/>
<REGION seq_beg="10" pdb_beg="10" seq_end="24" pdb_end="24" type="H"/>
<REGION seq_beg="25" pdb_beg="25" seq_end="33" pdb_end="33" type="1"/>
</CHAIN>
<CHAIN CHAINID="o" NUM_TM="0" TYPE="non_tm">
<SEQ>
MKYRILMATL LAVCLGIFSL SAPAFAAKQT LTYDDIVGTG LANKCPTLDD
TARGAYPIDS SQTYRIARLC LQPTTFLVKE EPKNKRQEAE FVPTKLVTRE
TTSLDQIQGE LKVNSDGSLT FVEEDGIDFQ PVTVQMAGGE RIPLLFTVKN
LVASTQPNVT SITTSTDFKG EFNVPSYRTA NFLDPKGRGL ASGYDSAIAL
PQAKEEELAR ANVKRFSLTK GQISLNVAKV DGRTGEIAGT FESEQLSDDD
MGAHEPHEVK IQGVFYASIE PA
</SEQ>
<REGION seq_beg="29" pdb_beg="3" seq_end="272" pdb_end="246" type="2"/>
</CHAIN>
<CHAIN CHAINID="t" NUM_TM="1" TYPE="alpha">
<SEQ>
METITYVFIF ACIIALFFFA IFFREPPRIT KK
</SEQ>
<REGION seq_beg="1" pdb_beg="1" seq_end="5" pdb_end="5" type="2"/>
<REGION seq_beg="6" pdb_beg="6" seq_end="21" pdb_end="21" type="H"/>
<REGION seq_beg="22" pdb_beg="22" seq_end="30" pdb_end="30" type="1"/>
</CHAIN>
<CHAIN CHAINID="u" NUM_TM="0" TYPE="non_tm">
<SEQ>
MQRLGRWLAL AYFVGVSLLG WINWSAPTLA ATASTEEELV NVVDEKLGTA
YGEKIDLNNT NIAAFIQYRG LYPTLAKLIV KNAPYESVED VLNIPGLTER
QKQILRENLE HFTVTEVETA LVEGGDRYNN GLYK
</SEQ>
<REGION seq_beg="38" pdb_beg="8" seq_end="134" pdb_end="104" type="2"/>
</CHAIN>
<CHAIN CHAINID="v" NUM_TM="0" TYPE="non_tm">
<SEQ>
MLKKCVWLAV ALCLCLWQFT MGTALAAELT PEVLTVPLNS EGKTITLTEK
QYLEGKRLFQ YACASCHVGG ITKTNPSLDL RTETLALATP PRDNIEGLVD
YMKNPTTYDG EQEIAEVHPS LRSADIFPKM RNLTEKDLVA IAGHILVEPK
ILGDKWGGGK VYY
</SEQ>
<REGION seq_beg="27" pdb_beg="1" seq_end="163" pdb_end="137" type="2"/>
</CHAIN>
<CHAIN CHAINID="y" NUM_TM="1" TYPE="alpha">
<SEQ>
MGIFNGIIEF LSNINFEVIA QLTMIAMIGI AGPMIIFLLA VRRGNL
</SEQ>
<REGION seq_beg="17" pdb_beg="17" seq_end="19" pdb_end="19" type="2"/>
<REGION seq_beg="20" pdb_beg="20" seq_end="35" pdb_end="35" type="H"/>
<REGION seq_beg="36" pdb_beg="36" seq_end="46" pdb_end="46" type="1"/>
</CHAIN>
<CHAIN CHAINID="x" NUM_TM="1" TYPE="alpha">
<SEQ>
MTITPSLKGF FIGLLSGAVV LGLTFAVLIA ISQIDKVQRS L
</SEQ>
<REGION seq_beg="2" pdb_beg="2" seq_end="10" pdb_end="10" type="2"/>
<REGION seq_beg="11" pdb_beg="11" seq_end="26" pdb_end="26" type="H"/>
<REGION seq_beg="27" pdb_beg="27" seq_end="39" pdb_end="39" type="1"/>
</CHAIN>
<CHAIN CHAINID="z" NUM_TM="2" TYPE="alpha">
<SEQ>
MTILFQLALA ALVILSFVMV IGVPVAYASP QDWDRSKQLI FLGSGLWIAL
VLVVGVLNFF VV
</SEQ>
<REGION seq_beg="1" pdb_beg="1" seq_end="4" pdb_end="4" type="2"/>
<REGION seq_beg="5" pdb_beg="5" seq_end="23" pdb_end="23" type="H"/>
<REGION seq_beg="24" pdb_beg="24" seq_end="41" pdb_end="41" type="1"/>
<REGION seq_beg="42" pdb_beg="42" seq_end="56" pdb_end="56" type="H"/>
<REGION seq_beg="57" pdb_beg="57" seq_end="62" pdb_end="62" type="2"/>
</CHAIN>
<CHAIN CHAINID="r" NUM_TM="1" TYPE="alpha">
<SEQ>
MDWRVLVVLL PVLLAAGWAV RNILPYAVKQ VQKLLQKAKA A
</SEQ>
<REGION seq_beg="2" pdb_beg="2" seq_end="5" pdb_end="5" type="2"/>
<REGION seq_beg="6" pdb_beg="6" seq_end="20" pdb_end="20" type="H"/>
<REGION seq_beg="21" pdb_beg="21" seq_end="35" pdb_end="35" type="1"/>
</CHAIN>
</pdbtm>
Overview
5kaf
PDB code:5kaf
Chain(s):A[5], B[6], C[6], D[5], E[1], F[1], H[1], I[1], J[1], K[1], L[1], M[1], O[0], T[1], U[0], V[0], Y[1], X[1], Z[2], R[1], a[5], b[6], c[6], d[5], e[1], f[1], h[1], i[1], j[1], k[1], l[1], m[1], o[0], t[1], u[0], v[0], y[1], x[1], z[2], r[1]
PDBTM type:Tm_Alpha
Title:RT XFEL STRUCTURE OF PHOTOSYSTEM II IN THE DARK STATE AT 3.0 A RESOLUTION
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Cross references