PDBTM: Protein Data Bank of Transmembrane Proteins
PDBTM version: 2017-06-16
Number of transmembrane proteins: 3227 (alpha: 2848 , beta: 366 )
Content of 5k47
<?xml version="1.0" encoding="iso-8859-1"?>
<pdbtm xmlns="http://pdbtm.enzim.hu" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://pdbtm_data.enzim.hu/pdbtm.xsd pdbtm.xsd" ID="5k47" TMP="yes">
<COPYRIGHT>
All information, data and files are copyright. PDBTM database is
produced in the Institute of Enzymology, Budapest, Hungary. There
are no restrictions on its use by non-profit institutions as long
as its content is in no way modified and this statement is not
removed from entries. Usage by and for commercial entities requires
a license agreement (send an email to pdbtm at enzim dot hu).
</COPYRIGHT>
<CREATE_DATE>2016-12-05</CREATE_DATE>
<MODIFICATION>
<DATE>2016-12-05</DATE>
<DESCR>Interfacial helix detected.</DESCR>
</MODIFICATION>
<RAWRES>
<TMRES>70.99</TMRES>
<TMTYPE>Tm_Alpha</TMTYPE>
<SPRES>Unknown</SPRES>
<PDBKWRES>no</PDBKWRES>
</RAWRES>
<MEMBRANE>
<NORMAL X="0.00145738" Y="0.00228596" Z="17.50000000"/>
<TMATRIX>
<ROWX X="1.00000000" Y="0.00000000" Z="0.00000000" T="-135.00791931"/>
<ROWY X="0.00000000" Y="1.00000000" Z="0.00000000" T="-135.00915527"/>
<ROWZ X="0.00000000" Y="0.00000000" Z="1.00000000" T="-130.63940430"/>
</TMATRIX>
</MEMBRANE>
<CHAIN CHAINID="A" NUM_TM="6" TYPE="alpha">
<SEQ>
MPRVAWAERL VRGLRGLWGT RLMEESSTNR EKYLKSVLRE LVTYLLFLIV
LCILTYGMMS SNVYYYTRMM SQLFLDTPVS KTEKTNFKTL SSMEDFWKFT
EGSLLDGLYW KMQPSNQTEA DNRSFIFYEN LLLGVPRIRQ LRVRNGSCSI
PQDLRDEIKE CYDVYSVSSE DRAPFGPRNG TAWIYTSEKD LNGSSHWGII
ATYSGAGYYL DLSRTREETA AQVASLKKNV WLDRGTRATF IDFSVYNANI
NLFCVVRLLV EFPATGGVIP SWQFQPLKLI RYVTTFDFFL AACEIIFCFF
IFYYVVEEIL EIRIHKLHYF RSFWNCLDVV IVVLSVVAIG INIYRTSNVE
VLLQFLEDQN TFPNFEHLAY WQIQFNNIAA VTVFFVWIKL FKFINFNRTM
SQLSTTMSRC AKDLFGFAIM FFIIFLAYAQ LAYLVFGTQV DDFSTFQECI
FTQFRIILGD INFAEIEEAN RVLGPIYFTT FVFFMFFILL NMFLAIINDT
YSEVKSDLAQ QKAEMELSDL IRKGYHKALV KLKLKKNTVD AENLYFQ
</SEQ>
<REGION seq_beg="30" pdb_beg="213" seq_end="37" pdb_end="220" type="2"/>
<REGION seq_beg="38" pdb_beg="221" seq_end="59" pdb_end="242" type="H"/>
<REGION seq_beg="60" pdb_beg="243" seq_end="114" pdb_end="297" type="1"/>
<REGION seq_beg="121" pdb_beg="304" seq_end="286" pdb_end="469" type="1"/>
<REGION seq_beg="287" pdb_beg="470" seq_end="313" pdb_end="496" type="H"/>
<REGION seq_beg="314" pdb_beg="497" seq_end="319" pdb_end="502" type="2"/>
<REGION seq_beg="320" pdb_beg="503" seq_end="345" pdb_end="528" type="H"/>
<REGION seq_beg="346" pdb_beg="529" seq_end="373" pdb_end="556" type="1"/>
<REGION seq_beg="374" pdb_beg="557" seq_end="395" pdb_end="578" type="H"/>
<REGION seq_beg="396" pdb_beg="579" seq_end="397" pdb_end="580" type="2"/>
<REGION seq_beg="398" pdb_beg="581" seq_end="410" pdb_end="593" type="F"/>
<REGION seq_beg="411" pdb_beg="594" seq_end="437" pdb_end="620" type="H"/>
<REGION seq_beg="438" pdb_beg="621" seq_end="445" pdb_end="628" type="1"/>
<REGION seq_beg="446" pdb_beg="629" seq_end="463" pdb_end="646" type="L"/>
<REGION seq_beg="464" pdb_beg="647" seq_end="469" pdb_end="652" type="F"/>
<REGION seq_beg="470" pdb_beg="653" seq_end="470" pdb_end="653" type="1"/>
<REGION seq_beg="471" pdb_beg="654" seq_end="498" pdb_end="681" type="H"/>
<REGION seq_beg="499" pdb_beg="682" seq_end="519" pdb_end="702" type="2"/>
</CHAIN>
<CHAIN CHAINID="B" NUM_TM="6" TYPE="alpha">
<SEQ>
MPRVAWAERL VRGLRGLWGT RLMEESSTNR EKYLKSVLRE LVTYLLFLIV
LCILTYGMMS SNVYYYTRMM SQLFLDTPVS KTEKTNFKTL SSMEDFWKFT
EGSLLDGLYW KMQPSNQTEA DNRSFIFYEN LLLGVPRIRQ LRVRNGSCSI
PQDLRDEIKE CYDVYSVSSE DRAPFGPRNG TAWIYTSEKD LNGSSHWGII
ATYSGAGYYL DLSRTREETA AQVASLKKNV WLDRGTRATF IDFSVYNANI
NLFCVVRLLV EFPATGGVIP SWQFQPLKLI RYVTTFDFFL AACEIIFCFF
IFYYVVEEIL EIRIHKLHYF RSFWNCLDVV IVVLSVVAIG INIYRTSNVE
VLLQFLEDQN TFPNFEHLAY WQIQFNNIAA VTVFFVWIKL FKFINFNRTM
SQLSTTMSRC AKDLFGFAIM FFIIFLAYAQ LAYLVFGTQV DDFSTFQECI
FTQFRIILGD INFAEIEEAN RVLGPIYFTT FVFFMFFILL NMFLAIINDT
YSEVKSDLAQ QKAEMELSDL IRKGYHKALV KLKLKKNTVD AENLYFQ
</SEQ>
<REGION seq_beg="30" pdb_beg="213" seq_end="37" pdb_end="220" type="2"/>
<REGION seq_beg="38" pdb_beg="221" seq_end="59" pdb_end="242" type="H"/>
<REGION seq_beg="60" pdb_beg="243" seq_end="114" pdb_end="297" type="1"/>
<REGION seq_beg="121" pdb_beg="304" seq_end="286" pdb_end="469" type="1"/>
<REGION seq_beg="287" pdb_beg="470" seq_end="313" pdb_end="496" type="H"/>
<REGION seq_beg="314" pdb_beg="497" seq_end="319" pdb_end="502" type="2"/>
<REGION seq_beg="320" pdb_beg="503" seq_end="345" pdb_end="528" type="H"/>
<REGION seq_beg="346" pdb_beg="529" seq_end="373" pdb_end="556" type="1"/>
<REGION seq_beg="374" pdb_beg="557" seq_end="395" pdb_end="578" type="H"/>
<REGION seq_beg="396" pdb_beg="579" seq_end="397" pdb_end="580" type="2"/>
<REGION seq_beg="398" pdb_beg="581" seq_end="410" pdb_end="593" type="F"/>
<REGION seq_beg="411" pdb_beg="594" seq_end="437" pdb_end="620" type="H"/>
<REGION seq_beg="438" pdb_beg="621" seq_end="445" pdb_end="628" type="1"/>
<REGION seq_beg="446" pdb_beg="629" seq_end="463" pdb_end="646" type="L"/>
<REGION seq_beg="464" pdb_beg="647" seq_end="469" pdb_end="652" type="F"/>
<REGION seq_beg="470" pdb_beg="653" seq_end="470" pdb_end="653" type="1"/>
<REGION seq_beg="471" pdb_beg="654" seq_end="498" pdb_end="681" type="H"/>
<REGION seq_beg="499" pdb_beg="682" seq_end="519" pdb_end="702" type="2"/>
</CHAIN>
<CHAIN CHAINID="C" NUM_TM="6" TYPE="alpha">
<SEQ>
MPRVAWAERL VRGLRGLWGT RLMEESSTNR EKYLKSVLRE LVTYLLFLIV
LCILTYGMMS SNVYYYTRMM SQLFLDTPVS KTEKTNFKTL SSMEDFWKFT
EGSLLDGLYW KMQPSNQTEA DNRSFIFYEN LLLGVPRIRQ LRVRNGSCSI
PQDLRDEIKE CYDVYSVSSE DRAPFGPRNG TAWIYTSEKD LNGSSHWGII
ATYSGAGYYL DLSRTREETA AQVASLKKNV WLDRGTRATF IDFSVYNANI
NLFCVVRLLV EFPATGGVIP SWQFQPLKLI RYVTTFDFFL AACEIIFCFF
IFYYVVEEIL EIRIHKLHYF RSFWNCLDVV IVVLSVVAIG INIYRTSNVE
VLLQFLEDQN TFPNFEHLAY WQIQFNNIAA VTVFFVWIKL FKFINFNRTM
SQLSTTMSRC AKDLFGFAIM FFIIFLAYAQ LAYLVFGTQV DDFSTFQECI
FTQFRIILGD INFAEIEEAN RVLGPIYFTT FVFFMFFILL NMFLAIINDT
YSEVKSDLAQ QKAEMELSDL IRKGYHKALV KLKLKKNTVD AENLYFQ
</SEQ>
<REGION seq_beg="30" pdb_beg="213" seq_end="37" pdb_end="220" type="2"/>
<REGION seq_beg="38" pdb_beg="221" seq_end="59" pdb_end="242" type="H"/>
<REGION seq_beg="60" pdb_beg="243" seq_end="114" pdb_end="297" type="1"/>
<REGION seq_beg="121" pdb_beg="304" seq_end="286" pdb_end="469" type="1"/>
<REGION seq_beg="287" pdb_beg="470" seq_end="313" pdb_end="496" type="H"/>
<REGION seq_beg="314" pdb_beg="497" seq_end="319" pdb_end="502" type="2"/>
<REGION seq_beg="320" pdb_beg="503" seq_end="345" pdb_end="528" type="H"/>
<REGION seq_beg="346" pdb_beg="529" seq_end="373" pdb_end="556" type="1"/>
<REGION seq_beg="374" pdb_beg="557" seq_end="395" pdb_end="578" type="H"/>
<REGION seq_beg="396" pdb_beg="579" seq_end="397" pdb_end="580" type="2"/>
<REGION seq_beg="398" pdb_beg="581" seq_end="410" pdb_end="593" type="F"/>
<REGION seq_beg="411" pdb_beg="594" seq_end="437" pdb_end="620" type="H"/>
<REGION seq_beg="438" pdb_beg="621" seq_end="445" pdb_end="628" type="1"/>
<REGION seq_beg="446" pdb_beg="629" seq_end="463" pdb_end="646" type="L"/>
<REGION seq_beg="464" pdb_beg="647" seq_end="469" pdb_end="652" type="F"/>
<REGION seq_beg="470" pdb_beg="653" seq_end="470" pdb_end="653" type="1"/>
<REGION seq_beg="471" pdb_beg="654" seq_end="498" pdb_end="681" type="H"/>
<REGION seq_beg="499" pdb_beg="682" seq_end="519" pdb_end="702" type="2"/>
</CHAIN>
<CHAIN CHAINID="D" NUM_TM="6" TYPE="alpha">
<SEQ>
MPRVAWAERL VRGLRGLWGT RLMEESSTNR EKYLKSVLRE LVTYLLFLIV
LCILTYGMMS SNVYYYTRMM SQLFLDTPVS KTEKTNFKTL SSMEDFWKFT
EGSLLDGLYW KMQPSNQTEA DNRSFIFYEN LLLGVPRIRQ LRVRNGSCSI
PQDLRDEIKE CYDVYSVSSE DRAPFGPRNG TAWIYTSEKD LNGSSHWGII
ATYSGAGYYL DLSRTREETA AQVASLKKNV WLDRGTRATF IDFSVYNANI
NLFCVVRLLV EFPATGGVIP SWQFQPLKLI RYVTTFDFFL AACEIIFCFF
IFYYVVEEIL EIRIHKLHYF RSFWNCLDVV IVVLSVVAIG INIYRTSNVE
VLLQFLEDQN TFPNFEHLAY WQIQFNNIAA VTVFFVWIKL FKFINFNRTM
SQLSTTMSRC AKDLFGFAIM FFIIFLAYAQ LAYLVFGTQV DDFSTFQECI
FTQFRIILGD INFAEIEEAN RVLGPIYFTT FVFFMFFILL NMFLAIINDT
YSEVKSDLAQ QKAEMELSDL IRKGYHKALV KLKLKKNTVD AENLYFQ
</SEQ>
<REGION seq_beg="30" pdb_beg="213" seq_end="37" pdb_end="220" type="2"/>
<REGION seq_beg="38" pdb_beg="221" seq_end="59" pdb_end="242" type="H"/>
<REGION seq_beg="60" pdb_beg="243" seq_end="114" pdb_end="297" type="1"/>
<REGION seq_beg="121" pdb_beg="304" seq_end="286" pdb_end="469" type="1"/>
<REGION seq_beg="287" pdb_beg="470" seq_end="313" pdb_end="496" type="H"/>
<REGION seq_beg="314" pdb_beg="497" seq_end="319" pdb_end="502" type="2"/>
<REGION seq_beg="320" pdb_beg="503" seq_end="345" pdb_end="528" type="H"/>
<REGION seq_beg="346" pdb_beg="529" seq_end="373" pdb_end="556" type="1"/>
<REGION seq_beg="374" pdb_beg="557" seq_end="395" pdb_end="578" type="H"/>
<REGION seq_beg="396" pdb_beg="579" seq_end="397" pdb_end="580" type="2"/>
<REGION seq_beg="398" pdb_beg="581" seq_end="410" pdb_end="593" type="F"/>
<REGION seq_beg="411" pdb_beg="594" seq_end="437" pdb_end="620" type="H"/>
<REGION seq_beg="438" pdb_beg="621" seq_end="445" pdb_end="628" type="1"/>
<REGION seq_beg="446" pdb_beg="629" seq_end="463" pdb_end="646" type="L"/>
<REGION seq_beg="464" pdb_beg="647" seq_end="469" pdb_end="652" type="F"/>
<REGION seq_beg="470" pdb_beg="653" seq_end="470" pdb_end="653" type="1"/>
<REGION seq_beg="471" pdb_beg="654" seq_end="498" pdb_end="681" type="H"/>
<REGION seq_beg="499" pdb_beg="682" seq_end="519" pdb_end="702" type="2"/>
</CHAIN>
</pdbtm>
Overview
5k47
PDB code:5k47
Chain(s):A[6], B[6], C[6], D[6]
PDBTM type:Tm_Alpha
Title:CRYOEM STRUCTURE OF THE HUMAN POLYCYSTIN-2/PKD2 TRP CHANNEL
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Cross references