PDBTM: Protein Data Bank of Transmembrane Proteins
PDBTM version: 2017-06-16
Number of transmembrane proteins: 3227 (alpha: 2848 , beta: 366 )
Content of 5hvd
<?xml version="1.0" encoding="iso-8859-1"?>
<pdbtm xmlns="http://pdbtm.enzim.hu" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://pdbtm_data.enzim.hu/pdbtm.xsd pdbtm.xsd" ID="5hvd" TMP="yes">
<COPYRIGHT>
All information, data and files are copyright. PDBTM database is
produced in the Institute of Enzymology, Budapest, Hungary. There
are no restrictions on its use by non-profit institutions as long
as its content is in no way modified and this statement is not
removed from entries. Usage by and for commercial entities requires
a license agreement (send an email to pdbtm at enzim dot hu).
</COPYRIGHT>
<CREATE_DATE>2017-06-14</CREATE_DATE>
<MODIFICATION>
<DATE>2017-06-14</DATE>
<DESCR>Interfacial helix detected.</DESCR>
</MODIFICATION>
<RAWRES>
<TMRES>61.94</TMRES>
<TMTYPE>Tm_Alpha</TMTYPE>
<SPRES>Unknown</SPRES>
<PDBKWRES>no</PDBKWRES>
</RAWRES>
<BIOMATRIX>
<MATRIX ID="1">
<APPLY_TO_CHAIN CHAINID="A" NEW_CHAINID="B"/>
<TMATRIX>
<ROWX X="-1.00000000" Y="0.00000000" Z="0.00000000" T="109.58000183"/>
<ROWY X="0.00000000" Y="-1.00000000" Z="0.00000000" T="109.58000183"/>
<ROWZ X="0.00000000" Y="0.00000000" Z="1.00000000" T="0.00000000"/>
</TMATRIX>
</MATRIX>
<MATRIX ID="2">
<APPLY_TO_CHAIN CHAINID="A" NEW_CHAINID="C"/>
<TMATRIX>
<ROWX X="0.00000000" Y="-1.00000000" Z="0.00000000" T="109.58000183"/>
<ROWY X="1.00000000" Y="0.00000000" Z="0.00000000" T="0.00000000"/>
<ROWZ X="0.00000000" Y="0.00000000" Z="1.00000000" T="0.00000000"/>
</TMATRIX>
</MATRIX>
<MATRIX ID="3">
<APPLY_TO_CHAIN CHAINID="A" NEW_CHAINID="D"/>
<TMATRIX>
<ROWX X="0.00000000" Y="1.00000000" Z="0.00000000" T="0.00000000"/>
<ROWY X="-1.00000000" Y="0.00000000" Z="0.00000000" T="109.58000183"/>
<ROWZ X="0.00000000" Y="0.00000000" Z="1.00000000" T="0.00000000"/>
</TMATRIX>
</MATRIX>
</BIOMATRIX>
<MEMBRANE>
<NORMAL X="0.00000004" Y="0.00000001" Z="18.00000000"/>
<TMATRIX>
<ROWX X="1.00000000" Y="0.00000000" Z="0.00000000" T="-54.78991699"/>
<ROWY X="0.00000000" Y="1.00000000" Z="0.00000000" T="-54.79000473"/>
<ROWZ X="0.00000000" Y="0.00000000" Z="1.00000000" T="-25.52899933"/>
</TMATRIX>
</MEMBRANE>
<CHAIN CHAINID="A" NUM_TM="6" TYPE="alpha">
<SEQ>
GSHMSRKIRD LIESKRFQNV ITAIIVLNGA VLGLLTDTTL SASSQNLLER
VDQLCLTIFI VEISLKIYAY GVRGFFRSGW NLFDFVIVAI ALMPAQGSLS
VLRTFRIFRV MRLVSVIPTM RRVVQGMLLA LPGVGSVAAL LTVVFYIAAV
MATNLYGATF PEWFGDLSKS LYTLFQVMTL ESWSMGIVRP VMNVHPNAWV
FFIPFIMLTT FTVLNLFIGI CVDAMAITKE QEEEAKTGHH QEPISQTLLH
LGDRLDRIEK QLAQNNELLQ RQQPQKK
</SEQ>
<REGION seq_beg="2" pdb_beg="-1" seq_end="2" pdb_end="-1" type="2"/>
<REGION seq_beg="3" pdb_beg="0" seq_end="12" pdb_end="9" type="F"/>
<REGION seq_beg="13" pdb_beg="10" seq_end="15" pdb_end="12" type="2"/>
<REGION seq_beg="16" pdb_beg="13" seq_end="37" pdb_end="34" type="H"/>
<REGION seq_beg="38" pdb_beg="35" seq_end="43" pdb_end="40" type="1"/>
<REGION seq_beg="44" pdb_beg="41" seq_end="68" pdb_end="65" type="H"/>
<REGION seq_beg="69" pdb_beg="66" seq_end="75" pdb_end="72" type="2"/>
<REGION seq_beg="76" pdb_beg="73" seq_end="94" pdb_end="91" type="H"/>
<REGION seq_beg="103" pdb_beg="100" seq_end="103" pdb_end="100" type="1"/>
<REGION seq_beg="104" pdb_beg="101" seq_end="121" pdb_end="118" type="H"/>
<REGION seq_beg="122" pdb_beg="119" seq_end="122" pdb_end="119" type="2"/>
<REGION seq_beg="123" pdb_beg="120" seq_end="156" pdb_end="153" type="H"/>
<REGION seq_beg="157" pdb_beg="154" seq_end="166" pdb_end="163" type="1"/>
<REGION seq_beg="167" pdb_beg="164" seq_end="185" pdb_end="182" type="L"/>
<REGION seq_beg="186" pdb_beg="183" seq_end="194" pdb_end="191" type="F"/>
<REGION seq_beg="195" pdb_beg="192" seq_end="197" pdb_end="194" type="1"/>
<REGION seq_beg="198" pdb_beg="195" seq_end="225" pdb_end="222" type="H"/>
<REGION seq_beg="226" pdb_beg="223" seq_end="264" pdb_end="261" type="2"/>
</CHAIN>
<CHAIN CHAINID="B" NUM_TM="6" TYPE="alpha">
<SEQ>
GSHMSRKIRD LIESKRFQNV ITAIIVLNGA VLGLLTDTTL SASSQNLLER
VDQLCLTIFI VEISLKIYAY GVRGFFRSGW NLFDFVIVAI ALMPAQGSLS
VLRTFRIFRV MRLVSVIPTM RRVVQGMLLA LPGVGSVAAL LTVVFYIAAV
MATNLYGATF PEWFGDLSKS LYTLFQVMTL ESWSMGIVRP VMNVHPNAWV
FFIPFIMLTT FTVLNLFIGI CVDAMAITKE QEEEAKTGHH QEPISQTLLH
LGDRLDRIEK QLAQNNELLQ RQQPQKK
</SEQ>
<REGION seq_beg="2" pdb_beg="-1" seq_end="2" pdb_end="-1" type="2"/>
<REGION seq_beg="3" pdb_beg="0" seq_end="12" pdb_end="9" type="F"/>
<REGION seq_beg="13" pdb_beg="10" seq_end="15" pdb_end="12" type="2"/>
<REGION seq_beg="16" pdb_beg="13" seq_end="37" pdb_end="34" type="H"/>
<REGION seq_beg="38" pdb_beg="35" seq_end="43" pdb_end="40" type="1"/>
<REGION seq_beg="44" pdb_beg="41" seq_end="68" pdb_end="65" type="H"/>
<REGION seq_beg="69" pdb_beg="66" seq_end="75" pdb_end="72" type="2"/>
<REGION seq_beg="76" pdb_beg="73" seq_end="94" pdb_end="91" type="H"/>
<REGION seq_beg="103" pdb_beg="100" seq_end="103" pdb_end="100" type="1"/>
<REGION seq_beg="104" pdb_beg="101" seq_end="121" pdb_end="118" type="H"/>
<REGION seq_beg="122" pdb_beg="119" seq_end="122" pdb_end="119" type="2"/>
<REGION seq_beg="123" pdb_beg="120" seq_end="156" pdb_end="153" type="H"/>
<REGION seq_beg="157" pdb_beg="154" seq_end="166" pdb_end="163" type="1"/>
<REGION seq_beg="167" pdb_beg="164" seq_end="185" pdb_end="182" type="L"/>
<REGION seq_beg="186" pdb_beg="183" seq_end="194" pdb_end="191" type="F"/>
<REGION seq_beg="195" pdb_beg="192" seq_end="197" pdb_end="194" type="1"/>
<REGION seq_beg="198" pdb_beg="195" seq_end="225" pdb_end="222" type="H"/>
<REGION seq_beg="226" pdb_beg="223" seq_end="264" pdb_end="261" type="2"/>
</CHAIN>
<CHAIN CHAINID="C" NUM_TM="6" TYPE="alpha">
<SEQ>
GSHMSRKIRD LIESKRFQNV ITAIIVLNGA VLGLLTDTTL SASSQNLLER
VDQLCLTIFI VEISLKIYAY GVRGFFRSGW NLFDFVIVAI ALMPAQGSLS
VLRTFRIFRV MRLVSVIPTM RRVVQGMLLA LPGVGSVAAL LTVVFYIAAV
MATNLYGATF PEWFGDLSKS LYTLFQVMTL ESWSMGIVRP VMNVHPNAWV
FFIPFIMLTT FTVLNLFIGI CVDAMAITKE QEEEAKTGHH QEPISQTLLH
LGDRLDRIEK QLAQNNELLQ RQQPQKK
</SEQ>
<REGION seq_beg="2" pdb_beg="-1" seq_end="2" pdb_end="-1" type="2"/>
<REGION seq_beg="3" pdb_beg="0" seq_end="12" pdb_end="9" type="F"/>
<REGION seq_beg="13" pdb_beg="10" seq_end="15" pdb_end="12" type="2"/>
<REGION seq_beg="16" pdb_beg="13" seq_end="37" pdb_end="34" type="H"/>
<REGION seq_beg="38" pdb_beg="35" seq_end="43" pdb_end="40" type="1"/>
<REGION seq_beg="44" pdb_beg="41" seq_end="68" pdb_end="65" type="H"/>
<REGION seq_beg="69" pdb_beg="66" seq_end="75" pdb_end="72" type="2"/>
<REGION seq_beg="76" pdb_beg="73" seq_end="94" pdb_end="91" type="H"/>
<REGION seq_beg="103" pdb_beg="100" seq_end="103" pdb_end="100" type="1"/>
<REGION seq_beg="104" pdb_beg="101" seq_end="121" pdb_end="118" type="H"/>
<REGION seq_beg="122" pdb_beg="119" seq_end="122" pdb_end="119" type="2"/>
<REGION seq_beg="123" pdb_beg="120" seq_end="156" pdb_end="153" type="H"/>
<REGION seq_beg="157" pdb_beg="154" seq_end="166" pdb_end="163" type="1"/>
<REGION seq_beg="167" pdb_beg="164" seq_end="185" pdb_end="182" type="L"/>
<REGION seq_beg="186" pdb_beg="183" seq_end="194" pdb_end="191" type="F"/>
<REGION seq_beg="195" pdb_beg="192" seq_end="197" pdb_end="194" type="1"/>
<REGION seq_beg="198" pdb_beg="195" seq_end="225" pdb_end="222" type="H"/>
<REGION seq_beg="226" pdb_beg="223" seq_end="264" pdb_end="261" type="2"/>
</CHAIN>
<CHAIN CHAINID="D" NUM_TM="6" TYPE="alpha">
<SEQ>
GSHMSRKIRD LIESKRFQNV ITAIIVLNGA VLGLLTDTTL SASSQNLLER
VDQLCLTIFI VEISLKIYAY GVRGFFRSGW NLFDFVIVAI ALMPAQGSLS
VLRTFRIFRV MRLVSVIPTM RRVVQGMLLA LPGVGSVAAL LTVVFYIAAV
MATNLYGATF PEWFGDLSKS LYTLFQVMTL ESWSMGIVRP VMNVHPNAWV
FFIPFIMLTT FTVLNLFIGI CVDAMAITKE QEEEAKTGHH QEPISQTLLH
LGDRLDRIEK QLAQNNELLQ RQQPQKK
</SEQ>
<REGION seq_beg="2" pdb_beg="-1" seq_end="2" pdb_end="-1" type="2"/>
<REGION seq_beg="3" pdb_beg="0" seq_end="12" pdb_end="9" type="F"/>
<REGION seq_beg="13" pdb_beg="10" seq_end="15" pdb_end="12" type="2"/>
<REGION seq_beg="16" pdb_beg="13" seq_end="37" pdb_end="34" type="H"/>
<REGION seq_beg="38" pdb_beg="35" seq_end="43" pdb_end="40" type="1"/>
<REGION seq_beg="44" pdb_beg="41" seq_end="68" pdb_end="65" type="H"/>
<REGION seq_beg="69" pdb_beg="66" seq_end="75" pdb_end="72" type="2"/>
<REGION seq_beg="76" pdb_beg="73" seq_end="94" pdb_end="91" type="H"/>
<REGION seq_beg="103" pdb_beg="100" seq_end="103" pdb_end="100" type="1"/>
<REGION seq_beg="104" pdb_beg="101" seq_end="121" pdb_end="118" type="H"/>
<REGION seq_beg="122" pdb_beg="119" seq_end="122" pdb_end="119" type="2"/>
<REGION seq_beg="123" pdb_beg="120" seq_end="156" pdb_end="153" type="H"/>
<REGION seq_beg="157" pdb_beg="154" seq_end="166" pdb_end="163" type="1"/>
<REGION seq_beg="167" pdb_beg="164" seq_end="185" pdb_end="182" type="L"/>
<REGION seq_beg="186" pdb_beg="183" seq_end="194" pdb_end="191" type="F"/>
<REGION seq_beg="195" pdb_beg="192" seq_end="197" pdb_end="194" type="1"/>
<REGION seq_beg="198" pdb_beg="195" seq_end="225" pdb_end="222" type="H"/>
<REGION seq_beg="226" pdb_beg="223" seq_end="264" pdb_end="261" type="2"/>
</CHAIN>
</pdbtm>
Overview
5hvd
PDB code:5hvd
Chain(s):A[6], B[6], C[6], D[6]
PDBTM type:Tm_Alpha
Title:FULL LENGTH OPEN-FORM SODIUM CHANNEL NAVMS I218C
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Cross references