PDBTM: Protein Data Bank of Transmembrane Proteins
PDBTM version: 2017-06-16
Number of transmembrane proteins: 3227 (alpha: 2848 , beta: 366 )
Content of 4ekw
<?xml version="1.0" encoding="iso-8859-1"?>
<pdbtm xmlns="http://pdbtm.enzim.hu" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://pdbtm_data.enzim.hu/pdbtm.xsd pdbtm.xsd" ID="4ekw" TMP="yes">
<COPYRIGHT>
All information, data and files are copyright. PDBTM database is
produced in the Institute of Enzymology, Budapest, Hungary. There
are no restrictions on its use by non-profit institutions as long
as its content is in no way modified and this statement is not
removed from entries. Usage by and for commercial entities requires
a license agreement (send an email to pdbtm at enzim dot hu).
</COPYRIGHT>
<CREATE_DATE>2012-06-28</CREATE_DATE>
<MODIFICATION>
<DATE>2012-06-28</DATE>
<DESCR>Interfacial helix detected.</DESCR>
</MODIFICATION>
<MODIFICATION>
<DATE>2013-05-22</DATE>
<DESCR>Sidedefinition added</DESCR>
</MODIFICATION>
<RAWRES>
<TMRES>67.49</TMRES>
<TMTYPE>Tm_Alpha</TMTYPE>
<SPRES>Unknown</SPRES>
<PDBKWRES>no</PDBKWRES>
</RAWRES>
<BIOMATRIX>
<MATRIX ID="1">
<APPLY_TO_CHAIN CHAINID="A" NEW_CHAINID="E"/>
<APPLY_TO_CHAIN CHAINID="B" NEW_CHAINID="F"/>
<TMATRIX>
<ROWX X="-1.00000000" Y="0.00000000" Z="0.00000000" T="0.00000000"/>
<ROWY X="0.00000000" Y="-1.00000000" Z="0.00000000" T="125.85600281"/>
<ROWZ X="0.00000000" Y="0.00000000" Z="1.00000000" T="0.00000000"/>
</TMATRIX>
</MATRIX>
<MATRIX ID="2">
<APPLY_TO_CHAIN CHAINID="C" NEW_CHAINID="G"/>
<APPLY_TO_CHAIN CHAINID="D" NEW_CHAINID="H"/>
<TMATRIX>
<ROWX X="-1.00000000" Y="0.00000000" Z="0.00000000" T="0.00000000"/>
<ROWY X="0.00000000" Y="-1.00000000" Z="0.00000000" T="125.85600281"/>
<ROWZ X="0.00000000" Y="0.00000000" Z="1.00000000" T="0.00000000"/>
</TMATRIX>
</MATRIX>
<DELETE CHAINID="C"/>
<DELETE CHAINID="D"/>
<DELETE CHAINID="G"/>
<DELETE CHAINID="H"/>
</BIOMATRIX>
<MEMBRANE>
<NORMAL X="-0.00000009" Y="-0.00000008" Z="13.75000000"/>
<TMATRIX>
<ROWX X="0.99999994" Y="0.00052295" Z="0.00000001" T="-0.03291678"/>
<ROWY X="-0.00052295" Y="0.99999988" Z="-0.00000000" T="-62.92799377"/>
<ROWZ X="-0.00000001" Y="-0.00000000" Z="1.00000012" T="-65.13200378"/>
</TMATRIX>
</MEMBRANE>
<SIDEDEFINITION Side1="Inside">
<NOTE>by similarity to chain: A (see PDBTM: 3rw0)</NOTE>
</SIDEDEFINITION>
<CHAIN CHAINID="A" NUM_TM="6" TYPE="alpha">
<SEQ>
MDYKDDDDKG SLVPRGSHMY LRITNIVESS FFTKFIIYLI VLNGITMGLE
TSKTFMQSFG VYTTLFNQIV ITIFTIEIIL RIYVHRISFF KDPWSLFDFF
VVAISLVPTS SGFEILRVLR VLRLFRLVTA VPQMRKIVSA LISVIPGMLS
VIALMTLFFY IFAIMATQLF GERFPEWFGT LGESFYTLFQ VMTLESWSMG
IVRPLMEVYP YAWVFFIPFI FVVTFVMINL VVAIIVDAMA ILNQKEEQHI
IDEVQSHEDN INNEIIKLRE EIVELKELIK TSLKN
</SEQ>
<REGION seq_beg="1" pdb_beg="983" seq_end="18" pdb_end="1000" type="U"/>
<REGION seq_beg="19" pdb_beg="1001" seq_end="19" pdb_end="1001" type="1"/>
<REGION seq_beg="20" pdb_beg="1002" seq_end="27" pdb_end="1009" type="F"/>
<REGION seq_beg="28" pdb_beg="1010" seq_end="33" pdb_end="1015" type="1"/>
<REGION seq_beg="34" pdb_beg="1016" seq_end="51" pdb_end="1033" type="H"/>
<REGION seq_beg="52" pdb_beg="1034" seq_end="62" pdb_end="1044" type="2"/>
<REGION seq_beg="63" pdb_beg="1045" seq_end="82" pdb_end="1064" type="H"/>
<REGION seq_beg="83" pdb_beg="1065" seq_end="93" pdb_end="1075" type="1"/>
<REGION seq_beg="94" pdb_beg="1076" seq_end="109" pdb_end="1091" type="H"/>
<REGION seq_beg="110" pdb_beg="1092" seq_end="115" pdb_end="1097" type="2"/>
<REGION seq_beg="116" pdb_beg="1098" seq_end="131" pdb_end="1113" type="H"/>
<REGION seq_beg="132" pdb_beg="1114" seq_end="142" pdb_end="1124" type="F"/>
<REGION seq_beg="143" pdb_beg="1125" seq_end="148" pdb_end="1130" type="1"/>
<REGION seq_beg="149" pdb_beg="1131" seq_end="167" pdb_end="1149" type="H"/>
<REGION seq_beg="168" pdb_beg="1150" seq_end="181" pdb_end="1163" type="2"/>
<REGION seq_beg="182" pdb_beg="1164" seq_end="198" pdb_end="1180" type="L"/>
<REGION seq_beg="199" pdb_beg="1181" seq_end="208" pdb_end="1190" type="F"/>
<REGION seq_beg="209" pdb_beg="1191" seq_end="211" pdb_end="1193" type="2"/>
<REGION seq_beg="212" pdb_beg="1194" seq_end="231" pdb_end="1213" type="H"/>
<REGION seq_beg="232" pdb_beg="1214" seq_end="237" pdb_end="1219" type="1"/>
<REGION seq_beg="238" pdb_beg="1220" seq_end="285" pdb_end="1267" type="U"/>
</CHAIN>
<CHAIN CHAINID="B" NUM_TM="6" TYPE="alpha">
<SEQ>
MDYKDDDDKG SLVPRGSHMY LRITNIVESS FFTKFIIYLI VLNGITMGLE
TSKTFMQSFG VYTTLFNQIV ITIFTIEIIL RIYVHRISFF KDPWSLFDFF
VVAISLVPTS SGFEILRVLR VLRLFRLVTA VPQMRKIVSA LISVIPGMLS
VIALMTLFFY IFAIMATQLF GERFPEWFGT LGESFYTLFQ VMTLESWSMG
IVRPLMEVYP YAWVFFIPFI FVVTFVMINL VVAIIVDAMA ILNQKEEQHI
IDEVQSHEDN INNEIIKLRE EIVELKELIK TSLKN
</SEQ>
<REGION seq_beg="1" pdb_beg="983" seq_end="18" pdb_end="1000" type="U"/>
<REGION seq_beg="19" pdb_beg="1001" seq_end="21" pdb_end="1003" type="1"/>
<REGION seq_beg="22" pdb_beg="1004" seq_end="27" pdb_end="1009" type="F"/>
<REGION seq_beg="28" pdb_beg="1010" seq_end="35" pdb_end="1017" type="1"/>
<REGION seq_beg="36" pdb_beg="1018" seq_end="52" pdb_end="1034" type="H"/>
<REGION seq_beg="53" pdb_beg="1035" seq_end="59" pdb_end="1041" type="2"/>
<REGION seq_beg="60" pdb_beg="1042" seq_end="79" pdb_end="1061" type="H"/>
<REGION seq_beg="80" pdb_beg="1062" seq_end="96" pdb_end="1078" type="1"/>
<REGION seq_beg="97" pdb_beg="1079" seq_end="112" pdb_end="1094" type="H"/>
<REGION seq_beg="113" pdb_beg="1095" seq_end="113" pdb_end="1095" type="2"/>
<REGION seq_beg="114" pdb_beg="1096" seq_end="129" pdb_end="1111" type="H"/>
<REGION seq_beg="130" pdb_beg="1112" seq_end="131" pdb_end="1113" type="1"/>
<REGION seq_beg="132" pdb_beg="1114" seq_end="142" pdb_end="1124" type="F"/>
<REGION seq_beg="143" pdb_beg="1125" seq_end="151" pdb_end="1133" type="1"/>
<REGION seq_beg="152" pdb_beg="1134" seq_end="169" pdb_end="1151" type="H"/>
<REGION seq_beg="170" pdb_beg="1152" seq_end="180" pdb_end="1162" type="2"/>
<REGION seq_beg="181" pdb_beg="1163" seq_end="198" pdb_end="1180" type="L"/>
<REGION seq_beg="199" pdb_beg="1181" seq_end="211" pdb_end="1193" type="2"/>
<REGION seq_beg="212" pdb_beg="1194" seq_end="231" pdb_end="1213" type="H"/>
<REGION seq_beg="232" pdb_beg="1214" seq_end="237" pdb_end="1219" type="1"/>
<REGION seq_beg="238" pdb_beg="1220" seq_end="285" pdb_end="1267" type="U"/>
</CHAIN>
<CHAIN CHAINID="E" NUM_TM="6" TYPE="alpha">
<SEQ>
MDYKDDDDKG SLVPRGSHMY LRITNIVESS FFTKFIIYLI VLNGITMGLE
TSKTFMQSFG VYTTLFNQIV ITIFTIEIIL RIYVHRISFF KDPWSLFDFF
VVAISLVPTS SGFEILRVLR VLRLFRLVTA VPQMRKIVSA LISVIPGMLS
VIALMTLFFY IFAIMATQLF GERFPEWFGT LGESFYTLFQ VMTLESWSMG
IVRPLMEVYP YAWVFFIPFI FVVTFVMINL VVAIIVDAMA ILNQKEEQHI
IDEVQSHEDN INNEIIKLRE EIVELKELIK TSLKN
</SEQ>
<REGION seq_beg="1" pdb_beg="983" seq_end="18" pdb_end="1000" type="U"/>
<REGION seq_beg="19" pdb_beg="1001" seq_end="19" pdb_end="1001" type="1"/>
<REGION seq_beg="20" pdb_beg="1002" seq_end="27" pdb_end="1009" type="F"/>
<REGION seq_beg="28" pdb_beg="1010" seq_end="33" pdb_end="1015" type="1"/>
<REGION seq_beg="34" pdb_beg="1016" seq_end="51" pdb_end="1033" type="H"/>
<REGION seq_beg="52" pdb_beg="1034" seq_end="62" pdb_end="1044" type="2"/>
<REGION seq_beg="63" pdb_beg="1045" seq_end="82" pdb_end="1064" type="H"/>
<REGION seq_beg="83" pdb_beg="1065" seq_end="93" pdb_end="1075" type="1"/>
<REGION seq_beg="94" pdb_beg="1076" seq_end="109" pdb_end="1091" type="H"/>
<REGION seq_beg="110" pdb_beg="1092" seq_end="115" pdb_end="1097" type="2"/>
<REGION seq_beg="116" pdb_beg="1098" seq_end="131" pdb_end="1113" type="H"/>
<REGION seq_beg="132" pdb_beg="1114" seq_end="142" pdb_end="1124" type="F"/>
<REGION seq_beg="143" pdb_beg="1125" seq_end="148" pdb_end="1130" type="1"/>
<REGION seq_beg="149" pdb_beg="1131" seq_end="167" pdb_end="1149" type="H"/>
<REGION seq_beg="168" pdb_beg="1150" seq_end="181" pdb_end="1163" type="2"/>
<REGION seq_beg="182" pdb_beg="1164" seq_end="198" pdb_end="1180" type="L"/>
<REGION seq_beg="199" pdb_beg="1181" seq_end="208" pdb_end="1190" type="F"/>
<REGION seq_beg="209" pdb_beg="1191" seq_end="211" pdb_end="1193" type="2"/>
<REGION seq_beg="212" pdb_beg="1194" seq_end="231" pdb_end="1213" type="H"/>
<REGION seq_beg="232" pdb_beg="1214" seq_end="237" pdb_end="1219" type="1"/>
<REGION seq_beg="238" pdb_beg="1220" seq_end="285" pdb_end="1267" type="U"/>
</CHAIN>
<CHAIN CHAINID="F" NUM_TM="6" TYPE="alpha">
<SEQ>
MDYKDDDDKG SLVPRGSHMY LRITNIVESS FFTKFIIYLI VLNGITMGLE
TSKTFMQSFG VYTTLFNQIV ITIFTIEIIL RIYVHRISFF KDPWSLFDFF
VVAISLVPTS SGFEILRVLR VLRLFRLVTA VPQMRKIVSA LISVIPGMLS
VIALMTLFFY IFAIMATQLF GERFPEWFGT LGESFYTLFQ VMTLESWSMG
IVRPLMEVYP YAWVFFIPFI FVVTFVMINL VVAIIVDAMA ILNQKEEQHI
IDEVQSHEDN INNEIIKLRE EIVELKELIK TSLKN
</SEQ>
<REGION seq_beg="1" pdb_beg="983" seq_end="18" pdb_end="1000" type="U"/>
<REGION seq_beg="19" pdb_beg="1001" seq_end="21" pdb_end="1003" type="1"/>
<REGION seq_beg="22" pdb_beg="1004" seq_end="27" pdb_end="1009" type="F"/>
<REGION seq_beg="28" pdb_beg="1010" seq_end="35" pdb_end="1017" type="1"/>
<REGION seq_beg="36" pdb_beg="1018" seq_end="52" pdb_end="1034" type="H"/>
<REGION seq_beg="53" pdb_beg="1035" seq_end="59" pdb_end="1041" type="2"/>
<REGION seq_beg="60" pdb_beg="1042" seq_end="79" pdb_end="1061" type="H"/>
<REGION seq_beg="80" pdb_beg="1062" seq_end="96" pdb_end="1078" type="1"/>
<REGION seq_beg="97" pdb_beg="1079" seq_end="112" pdb_end="1094" type="H"/>
<REGION seq_beg="113" pdb_beg="1095" seq_end="113" pdb_end="1095" type="2"/>
<REGION seq_beg="114" pdb_beg="1096" seq_end="129" pdb_end="1111" type="H"/>
<REGION seq_beg="130" pdb_beg="1112" seq_end="131" pdb_end="1113" type="1"/>
<REGION seq_beg="132" pdb_beg="1114" seq_end="142" pdb_end="1124" type="F"/>
<REGION seq_beg="143" pdb_beg="1125" seq_end="151" pdb_end="1133" type="1"/>
<REGION seq_beg="152" pdb_beg="1134" seq_end="169" pdb_end="1151" type="H"/>
<REGION seq_beg="170" pdb_beg="1152" seq_end="180" pdb_end="1162" type="2"/>
<REGION seq_beg="181" pdb_beg="1163" seq_end="198" pdb_end="1180" type="L"/>
<REGION seq_beg="199" pdb_beg="1181" seq_end="211" pdb_end="1193" type="2"/>
<REGION seq_beg="212" pdb_beg="1194" seq_end="231" pdb_end="1213" type="H"/>
<REGION seq_beg="232" pdb_beg="1214" seq_end="237" pdb_end="1219" type="1"/>
<REGION seq_beg="238" pdb_beg="1220" seq_end="285" pdb_end="1267" type="U"/>
</CHAIN>
</pdbtm>
Overview
4ekw
PDB code:4ekw
Chain(s):A[6], B[6], E[6], F[6]
PDBTM type:Tm_Alpha
Title:CRYSTAL STRUCTURE OF THE NAVAB VOLTAGE-GATED SODIUM CHANNEL (WILD- TYPE, 3.2 A)
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