PDBTM: Protein Data Bank of Transmembrane Proteins
PDBTM version: 2017-06-16
Number of transmembrane proteins: 3227 (alpha: 2848 , beta: 366 )
Content of 3j5p
<?xml version="1.0" encoding="iso-8859-1"?>
<pdbtm xmlns="http://pdbtm.enzim.hu" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://pdbtm_data.enzim.hu/pdbtm.xsd pdbtm.xsd" ID="3j5p" TMP="yes">
<COPYRIGHT>
All information, data and files are copyright. PDBTM database is
produced in the Institute of Enzymology, Budapest, Hungary. There
are no restrictions on its use by non-profit institutions as long
as its content is in no way modified and this statement is not
removed from entries. Usage by and for commercial entities requires
a license agreement (send an email to pdbtm at enzim dot hu).
</COPYRIGHT>
<CREATE_DATE>2013-12-16</CREATE_DATE>
<MODIFICATION>
<DATE>2013-12-16</DATE>
<DESCR>Interfacial helix detected.</DESCR>
</MODIFICATION>
<MODIFICATION>
<DATE>2013-12-17</DATE>
<DESCR>Sidedefinition added</DESCR>
</MODIFICATION>
<RAWRES>
<TMRES>64.84</TMRES>
<TMTYPE>Tm_Alpha</TMTYPE>
<SPRES>Unknown</SPRES>
<PDBKWRES>no</PDBKWRES>
</RAWRES>
<MEMBRANE>
<NORMAL X="-0.00032204" Y="-0.00114004" Z="16.50000000"/>
<TMATRIX>
<ROWX X="1.00000000" Y="0.00000000" Z="0.00000000" T="-0.00339142"/>
<ROWY X="0.00000000" Y="1.00000000" Z="0.00000000" T="-0.00365559"/>
<ROWZ X="0.00000000" Y="0.00000000" Z="1.00000000" T="21.11176300"/>
</TMATRIX>
</MEMBRANE>
<SIDEDEFINITION Side1="Outside">
<NOTE>According to 10.1038/NATURE12823/Fig1</NOTE>
</SIDEDEFINITION>
<CHAIN CHAINID="B" NUM_TM="6" TYPE="alpha">
<SEQ>
LYDRRSIFDA VAQSNCQELE SLLPFLQRSK KRLTDSEFKD PETGKTCLLK
AMLNLHNGQN DTIALLLDVA RKTDSLKQFV NASYTDSYYK GQTALHIAIE
RRNMTLVTLL VENGADVQAA ANGDFFKKTK GRPGFYFGEL PLSLAACTNQ
LAIVKFLLQN SWQPADISAR DSVGNTVLHA LVEVADNTVD NTKFVTSMYN
EILILGAKLH PTLKLEEITN RKGLTPLALA ASSGKIGVLA YILQREIHEP
ECRHLSRKFT EWAYGPVHSS LYDLSCIDTC EKNSVLEVIA YSSSETPNRH
DMLLVEPLNR LLQDKWDRFV KRIFYFNFFV YCLYMIIFTA AAYYRPVEGL
PPYKLKNTVG DYFRVTGEIL SVSGGVYFFF RGIQYFLQRR PSLKSLFVDS
YSEILFFVQS LFMLVSVVLY FSQRKEYVAS MVFSLAMGWT NMLYYTRGFQ
QMGIYAVMIE KMILRDLCRF MFVYLVFLFG FSTAVVTLIE DGKYNSLYST
CLELFKFTIG MGDLEFTENY DFKAVFIILL LAYVILTYIL LLNMLIALMG
ETVNKIAQES KNIWKLQRAI TILDTEKSFL KCMRKAUUUU UUUUUUUU
</SEQ>
<REGION seq_beg="1" pdb_beg="111" seq_end="322" pdb_end="432" type="2"/>
<REGION seq_beg="323" pdb_beg="433" seq_end="344" pdb_end="454" type="H"/>
<REGION seq_beg="345" pdb_beg="455" seq_end="363" pdb_end="473" type="1"/>
<REGION seq_beg="364" pdb_beg="474" seq_end="388" pdb_end="498" type="H"/>
<REGION seq_beg="389" pdb_beg="499" seq_end="392" pdb_end="502" type="2"/>
<REGION seq_beg="393" pdb_beg="503" seq_end="397" pdb_end="507" type="U"/>
<REGION seq_beg="398" pdb_beg="508" seq_end="398" pdb_end="508" type="2"/>
<REGION seq_beg="399" pdb_beg="509" seq_end="422" pdb_end="532" type="H"/>
<REGION seq_beg="423" pdb_beg="533" seq_end="426" pdb_end="536" type="1"/>
<REGION seq_beg="427" pdb_beg="537" seq_end="447" pdb_end="557" type="H"/>
<REGION seq_beg="448" pdb_beg="558" seq_end="449" pdb_end="559" type="2"/>
<REGION seq_beg="450" pdb_beg="560" seq_end="455" pdb_end="565" type="F"/>
<REGION seq_beg="456" pdb_beg="566" seq_end="488" pdb_end="598" type="H"/>
<REGION seq_beg="489" pdb_beg="599" seq_end="497" pdb_end="630" type="1"/>
<REGION seq_beg="498" pdb_beg="631" seq_end="515" pdb_end="648" type="L"/>
<REGION seq_beg="516" pdb_beg="649" seq_end="524" pdb_end="657" type="1"/>
<REGION seq_beg="525" pdb_beg="658" seq_end="550" pdb_end="683" type="H"/>
<REGION seq_beg="551" pdb_beg="684" seq_end="577" pdb_end="710" type="F"/>
<REGION seq_beg="578" pdb_beg="711" seq_end="597" pdb_end="762" type="2"/>
<REGION seq_beg="598" pdb_beg="763" seq_end="598" pdb_end="763" type="U"/>
</CHAIN>
<CHAIN CHAINID="A" NUM_TM="6" TYPE="alpha">
<SEQ>
LYDRRSIFDA VAQSNCQELE SLLPFLQRSK KRLTDSEFKD PETGKTCLLK
AMLNLHNGQN DTIALLLDVA RKTDSLKQFV NASYTDSYYK GQTALHIAIE
RRNMTLVTLL VENGADVQAA ANGDFFKKTK GRPGFYFGEL PLSLAACTNQ
LAIVKFLLQN SWQPADISAR DSVGNTVLHA LVEVADNTVD NTKFVTSMYN
EILILGAKLH PTLKLEEITN RKGLTPLALA ASSGKIGVLA YILQREIHEP
ECRHLSRKFT EWAYGPVHSS LYDLSCIDTC EKNSVLEVIA YSSSETPNRH
DMLLVEPLNR LLQDKWDRFV KRIFYFNFFV YCLYMIIFTA AAYYRPVEGL
PPYKLKNTVG DYFRVTGEIL SVSGGVYFFF RGIQYFLQRR PSLKSLFVDS
YSEILFFVQS LFMLVSVVLY FSQRKEYVAS MVFSLAMGWT NMLYYTRGFQ
QMGIYAVMIE KMILRDLCRF MFVYLVFLFG FSTAVVTLIE DGKYNSLYST
CLELFKFTIG MGDLEFTENY DFKAVFIILL LAYVILTYIL LLNMLIALMG
ETVNKIAQES KNIWKLQRAI TILDTEKSFL KCMRKAUUUU UUUUUUUU
</SEQ>
<REGION seq_beg="1" pdb_beg="111" seq_end="322" pdb_end="432" type="2"/>
<REGION seq_beg="323" pdb_beg="433" seq_end="344" pdb_end="454" type="H"/>
<REGION seq_beg="345" pdb_beg="455" seq_end="363" pdb_end="473" type="1"/>
<REGION seq_beg="364" pdb_beg="474" seq_end="388" pdb_end="498" type="H"/>
<REGION seq_beg="389" pdb_beg="499" seq_end="392" pdb_end="502" type="2"/>
<REGION seq_beg="393" pdb_beg="503" seq_end="397" pdb_end="507" type="U"/>
<REGION seq_beg="398" pdb_beg="508" seq_end="398" pdb_end="508" type="2"/>
<REGION seq_beg="399" pdb_beg="509" seq_end="422" pdb_end="532" type="H"/>
<REGION seq_beg="423" pdb_beg="533" seq_end="426" pdb_end="536" type="1"/>
<REGION seq_beg="427" pdb_beg="537" seq_end="447" pdb_end="557" type="H"/>
<REGION seq_beg="448" pdb_beg="558" seq_end="449" pdb_end="559" type="2"/>
<REGION seq_beg="450" pdb_beg="560" seq_end="455" pdb_end="565" type="F"/>
<REGION seq_beg="456" pdb_beg="566" seq_end="488" pdb_end="598" type="H"/>
<REGION seq_beg="489" pdb_beg="599" seq_end="497" pdb_end="630" type="1"/>
<REGION seq_beg="498" pdb_beg="631" seq_end="515" pdb_end="648" type="L"/>
<REGION seq_beg="516" pdb_beg="649" seq_end="524" pdb_end="657" type="1"/>
<REGION seq_beg="525" pdb_beg="658" seq_end="550" pdb_end="683" type="H"/>
<REGION seq_beg="551" pdb_beg="684" seq_end="577" pdb_end="710" type="F"/>
<REGION seq_beg="578" pdb_beg="711" seq_end="597" pdb_end="762" type="2"/>
<REGION seq_beg="598" pdb_beg="763" seq_end="598" pdb_end="763" type="U"/>
</CHAIN>
<CHAIN CHAINID="C" NUM_TM="6" TYPE="alpha">
<SEQ>
LYDRRSIFDA VAQSNCQELE SLLPFLQRSK KRLTDSEFKD PETGKTCLLK
AMLNLHNGQN DTIALLLDVA RKTDSLKQFV NASYTDSYYK GQTALHIAIE
RRNMTLVTLL VENGADVQAA ANGDFFKKTK GRPGFYFGEL PLSLAACTNQ
LAIVKFLLQN SWQPADISAR DSVGNTVLHA LVEVADNTVD NTKFVTSMYN
EILILGAKLH PTLKLEEITN RKGLTPLALA ASSGKIGVLA YILQREIHEP
ECRHLSRKFT EWAYGPVHSS LYDLSCIDTC EKNSVLEVIA YSSSETPNRH
DMLLVEPLNR LLQDKWDRFV KRIFYFNFFV YCLYMIIFTA AAYYRPVEGL
PPYKLKNTVG DYFRVTGEIL SVSGGVYFFF RGIQYFLQRR PSLKSLFVDS
YSEILFFVQS LFMLVSVVLY FSQRKEYVAS MVFSLAMGWT NMLYYTRGFQ
QMGIYAVMIE KMILRDLCRF MFVYLVFLFG FSTAVVTLIE DGKYNSLYST
CLELFKFTIG MGDLEFTENY DFKAVFIILL LAYVILTYIL LLNMLIALMG
ETVNKIAQES KNIWKLQRAI TILDTEKSFL KCMRKAUUUU UUUUUUUU
</SEQ>
<REGION seq_beg="1" pdb_beg="111" seq_end="322" pdb_end="432" type="2"/>
<REGION seq_beg="323" pdb_beg="433" seq_end="344" pdb_end="454" type="H"/>
<REGION seq_beg="345" pdb_beg="455" seq_end="363" pdb_end="473" type="1"/>
<REGION seq_beg="364" pdb_beg="474" seq_end="388" pdb_end="498" type="H"/>
<REGION seq_beg="389" pdb_beg="499" seq_end="392" pdb_end="502" type="2"/>
<REGION seq_beg="393" pdb_beg="503" seq_end="397" pdb_end="507" type="U"/>
<REGION seq_beg="398" pdb_beg="508" seq_end="398" pdb_end="508" type="2"/>
<REGION seq_beg="399" pdb_beg="509" seq_end="422" pdb_end="532" type="H"/>
<REGION seq_beg="423" pdb_beg="533" seq_end="426" pdb_end="536" type="1"/>
<REGION seq_beg="427" pdb_beg="537" seq_end="447" pdb_end="557" type="H"/>
<REGION seq_beg="448" pdb_beg="558" seq_end="449" pdb_end="559" type="2"/>
<REGION seq_beg="450" pdb_beg="560" seq_end="455" pdb_end="565" type="F"/>
<REGION seq_beg="456" pdb_beg="566" seq_end="488" pdb_end="598" type="H"/>
<REGION seq_beg="489" pdb_beg="599" seq_end="497" pdb_end="630" type="1"/>
<REGION seq_beg="498" pdb_beg="631" seq_end="515" pdb_end="648" type="L"/>
<REGION seq_beg="516" pdb_beg="649" seq_end="524" pdb_end="657" type="1"/>
<REGION seq_beg="525" pdb_beg="658" seq_end="550" pdb_end="683" type="H"/>
<REGION seq_beg="551" pdb_beg="684" seq_end="577" pdb_end="710" type="F"/>
<REGION seq_beg="578" pdb_beg="711" seq_end="597" pdb_end="762" type="2"/>
<REGION seq_beg="598" pdb_beg="763" seq_end="598" pdb_end="763" type="U"/>
</CHAIN>
<CHAIN CHAINID="D" NUM_TM="6" TYPE="alpha">
<SEQ>
LYDRRSIFDA VAQSNCQELE SLLPFLQRSK KRLTDSEFKD PETGKTCLLK
AMLNLHNGQN DTIALLLDVA RKTDSLKQFV NASYTDSYYK GQTALHIAIE
RRNMTLVTLL VENGADVQAA ANGDFFKKTK GRPGFYFGEL PLSLAACTNQ
LAIVKFLLQN SWQPADISAR DSVGNTVLHA LVEVADNTVD NTKFVTSMYN
EILILGAKLH PTLKLEEITN RKGLTPLALA ASSGKIGVLA YILQREIHEP
ECRHLSRKFT EWAYGPVHSS LYDLSCIDTC EKNSVLEVIA YSSSETPNRH
DMLLVEPLNR LLQDKWDRFV KRIFYFNFFV YCLYMIIFTA AAYYRPVEGL
PPYKLKNTVG DYFRVTGEIL SVSGGVYFFF RGIQYFLQRR PSLKSLFVDS
YSEILFFVQS LFMLVSVVLY FSQRKEYVAS MVFSLAMGWT NMLYYTRGFQ
QMGIYAVMIE KMILRDLCRF MFVYLVFLFG FSTAVVTLIE DGKYNSLYST
CLELFKFTIG MGDLEFTENY DFKAVFIILL LAYVILTYIL LLNMLIALMG
ETVNKIAQES KNIWKLQRAI TILDTEKSFL KCMRKAUUUU UUUUUUUU
</SEQ>
<REGION seq_beg="1" pdb_beg="111" seq_end="322" pdb_end="432" type="2"/>
<REGION seq_beg="323" pdb_beg="433" seq_end="344" pdb_end="454" type="H"/>
<REGION seq_beg="345" pdb_beg="455" seq_end="363" pdb_end="473" type="1"/>
<REGION seq_beg="364" pdb_beg="474" seq_end="388" pdb_end="498" type="H"/>
<REGION seq_beg="389" pdb_beg="499" seq_end="392" pdb_end="502" type="2"/>
<REGION seq_beg="393" pdb_beg="503" seq_end="397" pdb_end="507" type="U"/>
<REGION seq_beg="398" pdb_beg="508" seq_end="398" pdb_end="508" type="2"/>
<REGION seq_beg="399" pdb_beg="509" seq_end="422" pdb_end="532" type="H"/>
<REGION seq_beg="423" pdb_beg="533" seq_end="426" pdb_end="536" type="1"/>
<REGION seq_beg="427" pdb_beg="537" seq_end="447" pdb_end="557" type="H"/>
<REGION seq_beg="448" pdb_beg="558" seq_end="449" pdb_end="559" type="2"/>
<REGION seq_beg="450" pdb_beg="560" seq_end="455" pdb_end="565" type="F"/>
<REGION seq_beg="456" pdb_beg="566" seq_end="488" pdb_end="598" type="H"/>
<REGION seq_beg="489" pdb_beg="599" seq_end="497" pdb_end="630" type="1"/>
<REGION seq_beg="498" pdb_beg="631" seq_end="515" pdb_end="648" type="L"/>
<REGION seq_beg="516" pdb_beg="649" seq_end="524" pdb_end="657" type="1"/>
<REGION seq_beg="525" pdb_beg="658" seq_end="550" pdb_end="683" type="H"/>
<REGION seq_beg="551" pdb_beg="684" seq_end="577" pdb_end="710" type="F"/>
<REGION seq_beg="578" pdb_beg="711" seq_end="597" pdb_end="762" type="2"/>
<REGION seq_beg="598" pdb_beg="763" seq_end="598" pdb_end="763" type="U"/>
</CHAIN>
</pdbtm>
Overview
3j5p
PDB code:3j5p
Chain(s):B[6], A[6], C[6], D[6]
PDBTM type:Tm_Alpha
Title:STRUCTURE OF TRPV1 ION CHANNEL DETERMINED BY SINGLE PARTICLE ELECTRON CRYO-MICROSCOPY
Downloads
Cross references