PDBTM: Protein Data Bank of Transmembrane Proteins
PDBTM version: 2022-01-14
Number of transmembrane proteins: 6792 (alpha: 6254 , beta: 484 )
Content of 1ar1
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<pdbtm xmlns="http://pdbtm.enzim.hu" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://pdbtm.enzim.hu/data/pdbtm.xsd pdbtm.xsd" ID="1ar1" TMP="yes">
<COPYRIGHT>
All information, data and files are copyright. PDBTM database is
produced in the Institute of Enzymology, Budapest, Hungary. There
are no restrictions on its use by non-profit institutions as long
as its content is in no way modified and this statement is not
removed from entries. Usage by and for commercial entities requires
a license agreement (send an email to pdbtm at enzim dot hu).
</COPYRIGHT>
<CREATE_DATE>2003-08-10</CREATE_DATE>
<MODIFICATION>
<DATE>2005-04-06</DATE>
<DESCR>Format has been changed to pdbtm format v2.0</DESCR>
</MODIFICATION>
<MODIFICATION>
<DATE>2005-07-19</DATE>
<DESCR>Model has been recalculated by TMDET version 2.0</DESCR>
</MODIFICATION>
<MODIFICATION>
<DATE>2012-03-08</DATE>
<DESCR>PDB entry has been changed</DESCR>
</MODIFICATION>
<MODIFICATION>
<DATE>2012-06-15</DATE>
<DESCR>Interfacial helix detected.</DESCR>
</MODIFICATION>
<MODIFICATION>
<DATE>2013-05-10</DATE>
<DESCR>Sidedefinition added</DESCR>
</MODIFICATION>
<RAWRES>
<TMRES>67.45</TMRES>
<TMTYPE>Tm_Alpha</TMTYPE>
<SPRES>Unknown</SPRES>
<PDBKWRES>yes</PDBKWRES>
</RAWRES>
<MEMBRANE>
<NORMAL X="0.00000000" Y="0.00000000" Z="14.50000000"/>
<TMATRIX>
<ROWX X="0.99908221" Y="-0.03377147" Z="0.02635076" T="-5.96138096"/>
<ROWY X="-0.00724519" Y="0.47307169" Z="0.88099414" T="-38.01657867"/>
<ROWZ X="-0.04221825" Y="-0.88037640" Z="0.47239280" T="-10.32687187"/>
</TMATRIX>
</MEMBRANE>
<SIDEDEFINITION Side1="Outside">
<NOTE>see TOPDB: AP00327</NOTE>
</SIDEDEFINITION>
<CHAIN CHAINID="A" NUM_TM="12" TYPE="alpha">
<SEQ>
MADAAVHGHG DHHDTRGFFT RWFMSTNHKD IGILYLFTAG IVGLISVCFT
VYMRMELQHP GVQYMCLEGA RLIADASAEC TPNGHLWNVM ITYHGVLMMF
FVVIPALFGG FGNYFMPLHI GAPDMAFPRL NNLSYWMYVC GVALGVASLL
APGGNDQMGS GVGWVLYPPL STTEAGYSMD LAIFAVHVSG ASSILGAINI
ITTFLNMRAP GMTLFKVPLF AWSVFITAWL ILLSLPVLAG AITMLLMDRN
FGTQFFDPAG GGDPVLYQHI LWFFGHPEVY IIILPGFGII SHVISTFAKK
PIFGYLPMVL AMAAIGILGF VVWAHHMYTA GMSLTQQAYF MLATMTIAVP
TGIKVFSWIA TMWGGSIEFK TPMLWAFGFL FLFTVGGVTG VVLSQAPLDR
VYHDTYYVVA HFHYVMSLGA VFGIFAGVYY WIGKMSGRQY PEWAGQLHFW
MMFIGSNLIF FPQHFLGRQG MPRRYIDYPV EFAYWNNISS IGAYISFASF
LFFIGIVFYT LFAGKRVNVP NYWNEHADTL EWTLPSPPPE HTFETLPKRE
DWDRAHAH
</SEQ>
<REGION seq_beg="1" pdb_beg="1" seq_end="16" pdb_end="16" type="U"/>
<REGION seq_beg="17" pdb_beg="17" seq_end="34" pdb_end="34" type="2"/>
<REGION seq_beg="35" pdb_beg="35" seq_end="55" pdb_end="55" type="H"/>
<REGION seq_beg="56" pdb_beg="56" seq_end="89" pdb_end="89" type="1"/>
<REGION seq_beg="90" pdb_beg="90" seq_end="110" pdb_end="110" type="H"/>
<REGION seq_beg="111" pdb_beg="111" seq_end="133" pdb_end="133" type="2"/>
<REGION seq_beg="134" pdb_beg="134" seq_end="151" pdb_end="151" type="H"/>
<REGION seq_beg="152" pdb_beg="152" seq_end="177" pdb_end="177" type="1"/>
<REGION seq_beg="178" pdb_beg="178" seq_end="198" pdb_end="198" type="H"/>
<REGION seq_beg="199" pdb_beg="199" seq_end="226" pdb_end="226" type="2"/>
<REGION seq_beg="227" pdb_beg="227" seq_end="247" pdb_end="247" type="H"/>
<REGION seq_beg="248" pdb_beg="248" seq_end="267" pdb_end="267" type="1"/>
<REGION seq_beg="268" pdb_beg="268" seq_end="290" pdb_end="290" type="H"/>
<REGION seq_beg="291" pdb_beg="291" seq_end="298" pdb_end="298" type="F"/>
<REGION seq_beg="299" pdb_beg="299" seq_end="310" pdb_end="310" type="2"/>
<REGION seq_beg="311" pdb_beg="311" seq_end="326" pdb_end="326" type="H"/>
<REGION seq_beg="327" pdb_beg="327" seq_end="338" pdb_end="338" type="1"/>
<REGION seq_beg="339" pdb_beg="339" seq_end="359" pdb_end="359" type="H"/>
<REGION seq_beg="360" pdb_beg="360" seq_end="373" pdb_end="373" type="2"/>
<REGION seq_beg="374" pdb_beg="374" seq_end="395" pdb_end="395" type="H"/>
<REGION seq_beg="396" pdb_beg="396" seq_end="402" pdb_end="402" type="F"/>
<REGION seq_beg="403" pdb_beg="403" seq_end="407" pdb_end="407" type="1"/>
<REGION seq_beg="408" pdb_beg="408" seq_end="428" pdb_end="428" type="H"/>
<REGION seq_beg="429" pdb_beg="429" seq_end="443" pdb_end="443" type="2"/>
<REGION seq_beg="444" pdb_beg="444" seq_end="464" pdb_end="464" type="H"/>
<REGION seq_beg="465" pdb_beg="465" seq_end="488" pdb_end="488" type="1"/>
<REGION seq_beg="489" pdb_beg="489" seq_end="508" pdb_end="508" type="H"/>
<REGION seq_beg="509" pdb_beg="509" seq_end="545" pdb_end="545" type="2"/>
<REGION seq_beg="546" pdb_beg="546" seq_end="558" pdb_end="558" type="U"/>
</CHAIN>
<CHAIN CHAINID="B" NUM_TM="2" TYPE="alpha">
<SEQ>
MMAIATKRRG VAAVMSLGVA TMTAVPALAQ DVLGDLPVIG KPVNGGMNFQ
PASSPLAHDQ QWLDHFVLYI ITAVTIFVCL LLLICIVRFN RRANPVPARF
THNTPIEVIW TLVPVLILVA IGAFSLPILF RSQEMPNDPD LVIKAIGHQW
YWSYEYPNDG VAFDALMLEK EALADAGYSE DEYLLATDNP VVVPVGKKVL
VQVTATDVIH AWTIPAFAVK QDAVPGRIAQ LWFSVDQEGV YFGQCSELCG
INHAYMPIVV KAVSQEKYEA WLAGAKEEFA ADASDYLPAS PVKLASAE
</SEQ>
<REGION seq_beg="1" pdb_beg="-28" seq_end="29" pdb_end="0" type="U"/>
<REGION seq_beg="30" pdb_beg="1" seq_end="66" pdb_end="37" type="1"/>
<REGION seq_beg="67" pdb_beg="38" seq_end="87" pdb_end="58" type="H"/>
<REGION seq_beg="88" pdb_beg="59" seq_end="106" pdb_end="77" type="2"/>
<REGION seq_beg="107" pdb_beg="78" seq_end="124" pdb_end="95" type="H"/>
<REGION seq_beg="125" pdb_beg="96" seq_end="281" pdb_end="252" type="1"/>
<REGION seq_beg="282" pdb_beg="253" seq_end="298" pdb_end="269" type="U"/>
</CHAIN>
<CHAIN CHAINID="C" NUM_TM="0" TYPE="non_tm">
<SEQ>
EVKLQESGGD LVQPGGSLKL SCAASGFTFS SYTMSWVRQT PEKRLEWVAS
INNGGGRTYY PDTVKGRFTI SRDNAKNTLY LQMSSLKSED TAMYYCVRHE
YYYAMDYWGQ GTTVTVSSAW RHPQFGG
</SEQ>
<REGION seq_beg="1" pdb_beg="1" seq_end="118" pdb_end="118" type="1"/>
<REGION seq_beg="119" pdb_beg="119" seq_end="127" pdb_end="127" type="U"/>
</CHAIN>
<CHAIN CHAINID="D" NUM_TM="0" TYPE="non_tm">
<SEQ>
DIELTQTPVS LSASVGETVT ITCRASENIY SYLAWYQQKQ GKSPQFLVYN
AKTLGEGVPS RFSGSGSGTQ FSLKINSLLP EDFGSYYCQH HYGTPPLTFG
GGTKLEIKRE QKLISEEDLM
</SEQ>
<REGION seq_beg="1" pdb_beg="1" seq_end="108" pdb_end="108" type="1"/>
<REGION seq_beg="109" pdb_beg="109" seq_end="120" pdb_end="120" type="U"/>
</CHAIN>
</pdbtm>
Overview
1ar1
PDB code:1ar1
Chain(s):
PDBTM type:Tm_Alpha
Title:STRUCTURE AT 2.7 ANGSTROM RESOLUTION OF THE PARACOCCUS DENITRIFICANS TWO-SUBUNIT CYTOCHROME C OXIDASE COMPLEXED WITH AN ANTIBODY FV FRAGMENT
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