PDBTM
Protein Data Bank of Transmembrane Proteins
Tue 09 Feb, 2010  1128 TM structures Version 2.2 33766 visitors.
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Welcome to the PDBTM, the first comprehensive and up-to-date transmembrane protein selection of the Protein Data Bank (PDB). PDBTM database is maintained in the Institute of Enzymology by the Protein Structure Research Group. PDBTM database was created by scanning all PDB entries with TMDET algorithm. You can read more about PDBTM in our articles and in PDBTM manual. If you find PDBTM useful in your research, please cite our articles (Bioinformatics 20, 2964-2972; Nucleic Acids Research 33 Database Issue, D275-8).

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  • 64053 structures,
  • 1128 transmembrane structures,
    • 958 alpha helical,
    • 167 beta barrel.

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2005-08-20
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2005-07-20
TMDET version 2.0 was applied on all PDBTM entries.
Molecule of the month
Influenza B proton channel


2kix

Influenza B virus is an important constituent of human seasonal flu that accounts for about 50% of all influenza disease in recent years (according to the US Centers for Disease Control website, the epidemic sesonal flu just outbrake in Hungary ...).

Influenza B virus contains an integral membrane protein, BM2, that oligomerizes in the viral membrane to form a pH-activated proton channel. This file contains the solution structures the membrane-embedded channel domain of BM2. The channel domain assumes a left-handed coiled-coil tetramer formation with a helical packing angle of -37° to form a polar pore in the membrane for conducting ions. Mutagenesis and proton flux experiments identified residues involved in proton relay and suggest a mechanism of proton conductance. The cytoplasmic domain of BM2 also forms a coiled-coil tetramer. It has a bipolar charge distribution, in which a negatively charged region interacts specifically with the M1 matrix protein that is involved in packaging the genome in the virion. This interaction suggests BM2 also recruits matrix proteins to the cell surface during virus budding, making BM2 an unusual membrane protein with the dual roles of conducting ions and recruiting proteins to the membrane.